| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,570,028 – 8,570,140 |
| Length | 112 |
| Max. P | 0.880752 |
| Location | 8,570,028 – 8,570,140 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 86.43 |
| Shannon entropy | 0.25040 |
| G+C content | 0.57309 |
| Mean single sequence MFE | -30.70 |
| Consensus MFE | -24.72 |
| Energy contribution | -26.40 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.880752 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8570028 112 + 23011544 AUAAAUUUGCCACUGAUCGUCCUGGUCCUGCCAUGGACAUACCCUGUCCCUUUCUGCCCGACUGCAUCGUGCGUCGUGCGUCCCUUUCUGCCUUGUCCUGGCACUUGGCCAG .....................((((((.(((((.(((((...............(((.((((.((.....)))))).))).............))))))))))...)))))) ( -31.79, z-score = -2.53, R) >droEre2.scaffold_4929 9165865 112 + 26641161 AUAAAUUUGCCACUGAUCGUCCUGGUCCUGCCAUGGACAUGCUCCUUCCCUUUCUGCCCGACUGCAACGUGCGUCGUGUGUCCUUCUCUGGCUCGUCCUGGCACUUGGCCAG ........((((..((..(((((((.....))).)))).................((.((((.((.....)))))).)).....))..)))).....(((((.....))))) ( -32.00, z-score = -1.93, R) >droYak2.chr2L 11216951 85 + 22324452 AUAAAUUUGCCACUGAUCGUCCUGGUCCUGCCAUGGACAU---------------------------CGUGCGUCGUGUGUCCUUUUCUGGCUCGUCCUGGCACUUGGCCAG ........((((..(((.(((((((.....))).))))))---------------------------)((((...(..((.((......))..))..)..)))).))))... ( -24.30, z-score = -1.04, R) >droSec1.super_3 4057089 112 + 7220098 AUAAAUUUGCCACUGAUCGUCCUGGUCCUGCCAUGGACAUGUCCUGUCCCUCUCUGCCCGACUGCAUCGUGCGUCGUGUGUCCCUUUCUGGCUCGUCCUGGCACUUGGCCAG .....................((((((.(((((.((((.................((.((((.((.....)))))).))(..((.....))..))))))))))...)))))) ( -31.70, z-score = -1.58, R) >droSim1.chr2L 8358856 112 + 22036055 AUAAAUUUGCCACUGAUCGUCCUGGUCCUGCCAUGGACAUGCCCUGUCCCUCUCUGCCCGACUGCAUCGUGCGUCGUGUGUCCCUUUCUGGCUCGUCCUGGCACUUGGCCAG .....................((((((.(((((.((((..(((..(.........((.((((.((.....)))))).))........).)))..)))))))))...)))))) ( -33.73, z-score = -2.11, R) >consensus AUAAAUUUGCCACUGAUCGUCCUGGUCCUGCCAUGGACAUGCCCUGUCCCUCUCUGCCCGACUGCAUCGUGCGUCGUGUGUCCCUUUCUGGCUCGUCCUGGCACUUGGCCAG .....................((((((.(((((.((((.................((.((((.((.....)))))).))(((.......)))..)))))))))...)))))) (-24.72 = -26.40 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:21 2011