| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,687,100 – 20,687,191 |
| Length | 91 |
| Max. P | 0.577811 |
| Location | 20,687,100 – 20,687,191 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 72.71 |
| Shannon entropy | 0.50415 |
| G+C content | 0.46540 |
| Mean single sequence MFE | -29.30 |
| Consensus MFE | -11.89 |
| Energy contribution | -13.23 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577811 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20687100 91 - 27905053 ---GACAGUGGGGUAGU-GGGUAAGGUCCCUGACUGGGAUCUCAC--ACCAAGGGAUUUCUUUGGGG----UAAUACCUAACCAUAUCUGUUAUGCACGAC ---(((((...(((..(-((((((((((((.....))))))).((--.((((((.....)))))).)----)..)))))))))....)))))......... ( -31.80, z-score = -1.48, R) >droEre2.scaffold_4820 3101059 91 + 10470090 ---GACAGUGGGGUAGUGGGGUAAGGUCCCCGACUGGGAUCUCAC--AGCUAGGGAUUUCUUCGGGG-----AAUUCCUUACAAUAGCUAUUAUGCACGGC ---....(((.((((((...(((((((((((((..(..(((((..--.....)))))..).))))))-----)...))))))....))))))...)))... ( -37.80, z-score = -3.72, R) >droYak2.chr3R 3021900 89 + 28832112 UGGAACAGUGGGGUAGUGGGGUAAGGUCCAUG------AUCCCAC--AGCAAGGGAUUUCUUGGGGG----GAAUUCCUUACAAUAUCUUUUAUGCACGAC .......(((((((.(((((......))))).------)))))))--.(((((((((...(((..((----(....)))..))).))))))..)))..... ( -29.90, z-score = -2.24, R) >droSec1.super_0 21034872 91 - 21120651 ---GACAGUGGGGUAGU-GGGUAAGGUCCCUGACUGGGAUCUCAC--AGCAAGGGAUUUCUUUGGGG----GAAUUCCUGACCAUAUCUGUUAUGCACGAC ---(((((...(((.((-..((.(((((((.....))))))).))--.)).((((((((((....))----)))))))).)))....)))))......... ( -33.20, z-score = -1.79, R) >droSim1.chr3R 20523680 91 - 27517382 ---GACAGUGGGGUAGU-GGGUAAGGUCCCUGACUGGGAUCUCAC--AGCAAGGGAUUUCUUUGGGG----GAAUUCCUAACCAUAUCUGUUAUGCACGAC ---(((((...(((.((-..((.(((((((.....))))))).))--.)).((((((((((....))----)))))))).)))....)))))......... ( -33.10, z-score = -2.09, R) >droWil1.scaffold_181108 1592135 98 + 4707319 ---GAUAUUUAAGAUUAUGGGAAAUUUGCCUGUUUUAAGUUUCACUUUCCAUUGUACUUUUUAGCCAUUUUGAAUACUUUCUAGUUUUUUUUUUGUGAUUC ---..(((((((((...(((((((((((.......))))))))((........)).........))))))))))))......................... ( -10.00, z-score = 0.80, R) >consensus ___GACAGUGGGGUAGU_GGGUAAGGUCCCUGACUGGGAUCUCAC__AGCAAGGGAUUUCUUUGGGG____GAAUUCCUUACAAUAUCUGUUAUGCACGAC .......(((.(......(((((.(((((((((..((((((((.........)))))))).)))))).............))).)))))....).)))... (-11.89 = -13.23 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:38 2011