| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,671,685 – 20,671,795 |
| Length | 110 |
| Max. P | 0.689676 |
| Location | 20,671,685 – 20,671,795 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 77.93 |
| Shannon entropy | 0.35266 |
| G+C content | 0.37093 |
| Mean single sequence MFE | -23.42 |
| Consensus MFE | -13.94 |
| Energy contribution | -15.38 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.689676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20671685 110 + 27905053 UUUUAUAAUGAUGUCUGGUACGGAGAUGAUGAUAUUAAUACAAGUCAGCGCGCCGAAGGCAGAUCAAUUAGCCUUGUCGCGAACUCAUUGAUAAGGCAAUAUCUCAUUAA .....(((((((((((....(((.(.((.((((..........)))).))).))).))))).........(((((((((.........)))))))))......)))))). ( -26.20, z-score = -0.76, R) >droSim1.chr3R 20508257 97 + 27517382 -------------UUUUAUACGGAGAUGAUGAUAUUAAUACAAGUCAGCGCGCUGAAGGCAAAUCAAUUAGCCUUGUCGCGUACUCAUUGAUAAGGCAAUAUCUCAUUAA -------------.........((((((.((.(((((((...(((..(((((...(((((..........)))))..)))))))).)))))))...)).))))))..... ( -24.30, z-score = -1.89, R) >droSec1.super_0 21019493 97 + 21120651 -------------UUUUAUACGGAGAUGAUGAUAUUAAUACAAGUCAGCGCGCUGAAGGCAAAUCAAUUAGCCUUGUCGCGUACUCAUUGAUAAGGCAAUAUCUCAUUAA -------------.........((((((.((.(((((((...(((..(((((...(((((..........)))))..)))))))).)))))))...)).))))))..... ( -24.30, z-score = -1.89, R) >droYak2.chr3R 3006548 87 - 28832112 ---------------UAAUAUCUGGA-----GUAUUAAUACAAGUCAGU---AUUAAUACAAAUCAAUUAGCCUUGUCGAGUACUUACUGAUCAGGCAAUACCUCAUUAA ---------------........((.-----((((((((((......))---))))))))..........((((.(((.(((....)))))).))))....))....... ( -22.10, z-score = -4.02, R) >droEre2.scaffold_4820 3085497 90 - 10470090 ---------------UGAUAUCUGGA-----GCGUUAAUACAAGUCAGCGCGAUGGAGGCAAAUCAAUUAGCCUUGUCGAGUACUUAUUGAUCAGGCAAUACCUCAUUAA ---------------((...((((..-----(((((.((....)).)))))..))))..)).........((((.(((((.......))))).))))............. ( -20.20, z-score = -0.55, R) >consensus _____________U_UGAUACGGAGAUGAUGAUAUUAAUACAAGUCAGCGCGCUGAAGGCAAAUCAAUUAGCCUUGUCGCGUACUCAUUGAUAAGGCAAUAUCUCAUUAA ........................(((((.((((((...........((.(......)))..........(((((((((.........)))))))))))))))))))).. (-13.94 = -15.38 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:37 2011