| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,641,178 – 20,641,301 |
| Length | 123 |
| Max. P | 0.998356 |
| Location | 20,641,178 – 20,641,301 |
|---|---|
| Length | 123 |
| Sequences | 6 |
| Columns | 126 |
| Reading direction | reverse |
| Mean pairwise identity | 75.53 |
| Shannon entropy | 0.47105 |
| G+C content | 0.48225 |
| Mean single sequence MFE | -39.18 |
| Consensus MFE | -23.23 |
| Energy contribution | -24.98 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.95 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.33 |
| SVM RNA-class probability | 0.998356 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20641178 123 - 27905053 AGAGAGAAGGCCUUCUAGGCCUAGAGACCAAUUAGGAA---GACGUUCUAGGUCAAGGGACCAAAAGGAAAGAAGACGCUCUAGGCCAAGGGAACAAAAUGAGAGAAGGCGUUCUAGAUCUAGAGA (((.((((.(((((((.(((((((((......(((((.---....)))))((((....))))................)))))))))..(....)........))))))).))))...)))..... ( -45.20, z-score = -4.36, R) >droPer1.super_7 2708521 108 + 4445127 CGAGCGAAGAAACCCAAA--UGAGAGGCAGAUCAGGGA--GGGCAACGAUGG--AAAACGUUUCAAUGAUCGCCGGCGCUCAUCAUCCAGGGAUCGUAUCAAUCGAAGAGAUCA------------ .(((((..(.....)...--.....(((.(((((..((--.(....)((((.--....))))))..))))))))..)))))..........((((...((....))...)))).------------ ( -26.60, z-score = 0.28, R) >droEre2.scaffold_4820 3054829 126 + 10470090 AGAGAGAAGGCGUUCUAGGCCUAGAGACCAAUUAGAAAGAGAACGUUCUAGGUCGAGAGAUCAAAAGGAAAGAAGACGCUCCAGGCCAAGGGAACAAAACGAAAGAAGGCGUUCUAGAUCUAGAGA (((.((((.(((((((.(((((.(((......(((((........)))))((((....))))................))).)))))...)))))....(....)...)).))))...)))..... ( -38.10, z-score = -3.08, R) >droYak2.chr3R 2975519 126 + 28832112 AGAGAGAAGGCGUUCUAGGCCUAGAGACCAAUUAGAAAGAGAACGUUCUAGGUCGAGAGAUCGAAAGGAAAGAAGACGCUCUAGGGCAAGAGAACAAAACGAAAGAAGGCGUUCUAGAUCUAGAGA (((.((((.(((((((.(.(((((((......(((((........)))))((((....))))................))))))).)...)))))....(....)...)).))))...)))..... ( -38.00, z-score = -3.11, R) >droSec1.super_0 20976711 126 - 21120651 AGACAGAAGGCGUUCUAGGCCUAGAGACCAAUCAGAAAGGGGACGUUCUAGGUCAAGGGACCAAAAGGAAAGAAGACGCUCUAGGCCAAGGGAACAAAACGAGAGAAGGCGUUCUAGAUCUAGGGA ((((((((.(((((((.(((((((((.....((((((.(....).)))).((((....)))).........)).....)))))))))...)))))....(....)...)).)))).).)))..... ( -43.60, z-score = -3.72, R) >droSim1.chr3R 20476622 126 - 27517382 AGACAGAAGGCGUUCUAGGCCUAGAGACCAAUCAGAAAGGGGACGUUCUAGGUCAAGGGACCAAAAGGAAAGAAGACGCUCUAGGCCAAGGGAACAAAACGAGAGAAGGCGUUCUAGAUCUAGGGA ((((((((.(((((((.(((((((((.....((((((.(....).)))).((((....)))).........)).....)))))))))...)))))....(....)...)).)))).).)))..... ( -43.60, z-score = -3.72, R) >consensus AGAGAGAAGGCGUUCUAGGCCUAGAGACCAAUCAGAAAG_GGACGUUCUAGGUCAAGAGACCAAAAGGAAAGAAGACGCUCUAGGCCAAGGGAACAAAACGAGAGAAGGCGUUCUAGAUCUAGAGA ....((((.((.((((.(((((((((.......((((.(....).)))).((((....))))................))))))))).)))).......(....)...)).))))........... (-23.23 = -24.98 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:36 2011