| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,617,567 – 20,617,624 |
| Length | 57 |
| Max. P | 0.734862 |
| Location | 20,617,567 – 20,617,624 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 85.44 |
| Shannon entropy | 0.25684 |
| G+C content | 0.39298 |
| Mean single sequence MFE | -13.44 |
| Consensus MFE | -10.50 |
| Energy contribution | -10.06 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734862 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20617567 57 + 27905053 AUGCCUAAAGCAAUCACUUGAAGAUCGACCUACAUUCAAAAGUAGGUUGGGAAAUCG .(((.....))).......((...(((((((((........)))))))))....)). ( -13.80, z-score = -2.36, R) >droEre2.scaffold_4820 3030553 57 - 10470090 AUGCUUAAGGUAAUCACCUGGAGAUUGGCCCACAUUUAAAUGUAGGUUGAGCAAGCA .(((((.((((....))))...(.(..(((.((((....)))).)))..).)))))) ( -15.50, z-score = -1.34, R) >droYak2.chr3R 2951885 57 - 28832112 GUGUUUAAAGUAAUCACCUGGCGAUUGGCCUACAUUGCAAAGUAGGUUGGGAAAUCG (((.(((...))).))).......(..((((((........))))))..)....... ( -10.90, z-score = 0.00, R) >droSec1.super_0 20953407 57 + 21120651 AUGUUUAAAGUAAUCACUUGGAGAUCGACCUACAUUUAAAAGUAGGUUGGGAAAUCG .......((((....)))).((..(((((((((........)))))))))....)). ( -13.50, z-score = -2.27, R) >droSim1.chr3R 20452311 57 + 27517382 AUGUUUAAAGUAAUCACUUGGAGAUCGACCUACAUUUAAAAGUAGGUUGGGAAAUCG .......((((....)))).((..(((((((((........)))))))))....)). ( -13.50, z-score = -2.27, R) >consensus AUGUUUAAAGUAAUCACUUGGAGAUCGACCUACAUUUAAAAGUAGGUUGGGAAAUCG ........................(((((((((........)))))))))....... (-10.50 = -10.06 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:31 2011