| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,589,608 – 20,589,712 |
| Length | 104 |
| Max. P | 0.622261 |
| Location | 20,589,608 – 20,589,712 |
|---|---|
| Length | 104 |
| Sequences | 7 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 76.26 |
| Shannon entropy | 0.45702 |
| G+C content | 0.42303 |
| Mean single sequence MFE | -25.62 |
| Consensus MFE | -15.21 |
| Energy contribution | -15.60 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.622261 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20589608 104 + 27905053 CCUAAUUAAGUUACGUUCAGGUAAUGAAGUGGCUAACUUCUUUGCGCCAAUUUAUGGCGGUUAGGCAAUAAAG-AGAUAGCU-----UCGCCACCUCAUUGCUCCCAGAU ...................((((((((.(((((.....(((((((((((.....)))))(.....)..)))))-)((.....-----))))))).))))))))....... ( -27.80, z-score = -1.34, R) >droSim1.chr3R 20422921 104 + 27517382 CCUAAUUAAGUUACGUUCAGGUAAUGAAGUGGCUAACUUCUUUGCGCCAAUUUAUGGCGGUUAGGCAAUAAAG-AGAUAGCU-----UCGCCACCUCAUUGCUCCCAGAU ...................((((((((.(((((.....(((((((((((.....)))))(.....)..)))))-)((.....-----))))))).))))))))....... ( -27.80, z-score = -1.34, R) >droSec1.super_0 20925313 83 + 21120651 CCUAAUUAAGUUACGUUCAGGUAAUGAAGUGGCUAACUUCUUUGCGCCAAUUUAUGGCGGUUAGGCAAU-----------CA-----UUGCCCCCAGAU----------- ...................((((((((..((.(((((.......(((((.....)))))))))).)).)-----------))-----))))).......----------- ( -23.21, z-score = -1.69, R) >droYak2.chr3R 2923185 104 - 28832112 CCUAAUUAAGUUACGUUCAGGUAAUGAAGUGGCUAACUUCUUUGCGCCAAUUUAUGGCGGUUAGGCAAUAAAG-AGCCAGCA-----UCACCGCCUUAUGGCUCCCAGAU ((((((..((((((.((((.....))))))))))..........(((((.....))))))))))).......(-(((((((.-----.....))....))))))...... ( -29.90, z-score = -1.45, R) >droEre2.scaffold_4820 3001236 104 - 10470090 CCUAAUUAAGUUACGUUCAGAUAAUGAAGUGGCUAACUUCUUUGCGCCAAUUUAUGGCGGUUAGGCAAUAAAG-AGCCAGCC-----UCGCCACUUCAUGGCUCCCAGAU ..................((...((((((((((............((((.....))))((((.(((.......-.)))))))-----..))))))))))..))....... ( -32.00, z-score = -2.44, R) >droAna3.scaffold_12911 2765585 105 - 5364042 CUUAAUUAAGUUACGUUCAGGUAAUGAAGUGGCUAACUUCUUUGCACCAAUUUAUGGCGGUUUGGCGAGGGAGCAGCUAAUAAAAAGCCAGCAUCUCAUUGCCCU----- ...................((((((((..((.((..((((((((((((..........)))...)))))))))..(((.......))).))))..))))))))..----- ( -26.30, z-score = -0.17, R) >droWil1.scaffold_181130 8146893 91 + 16660200 CCUAAUUAAAUUAUGCUGAGGUAAUGAAGUGGCUAACUUCUUUACAUCAAUUUAUGACGGUU--GCAACUUUC---UCAAUU-----CCUUUCUUACAAAG--------- ................((((((((.(((((.....))))).))))..(((((......))))--).......)---)))...-----..............--------- ( -12.30, z-score = -0.31, R) >consensus CCUAAUUAAGUUACGUUCAGGUAAUGAAGUGGCUAACUUCUUUGCGCCAAUUUAUGGCGGUUAGGCAAUAAAG_AGCCAGCA_____UCGCCACCUCAUUGCUCCCAGAU (((((((.............((((.(((((.....))))).))))((((.....)))))))))))............................................. (-15.21 = -15.60 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:31 2011