| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,563,650 – 8,563,720 |
| Length | 70 |
| Max. P | 0.518750 |
| Location | 8,563,650 – 8,563,720 |
|---|---|
| Length | 70 |
| Sequences | 6 |
| Columns | 83 |
| Reading direction | forward |
| Mean pairwise identity | 67.48 |
| Shannon entropy | 0.57283 |
| G+C content | 0.32263 |
| Mean single sequence MFE | -7.97 |
| Consensus MFE | -3.90 |
| Energy contribution | -4.32 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.518750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8563650 70 + 23011544 AACAAACUUUAAUAUUACGCAUACGACCAGUGUGCCAAGUAUUCAGUAUUC-----CUAAACUAAUAACUUAAAA-------- .....(((..((((((..((((((.....))))))..)))))).)))....-----...................-------- ( -10.30, z-score = -2.30, R) >droEre2.scaffold_4929 9159502 73 + 26641161 AAAAAUCUUUAAAAUUGCGCAUACGACCAGUGUGCCGUGCAUUCAUUAUUCAUC--UCAAACUAAUACCUUACAA-------- ...............(((((((((.....))))))...))).............--...................-------- ( -9.30, z-score = -1.41, R) >droYak2.chr2L 11210638 75 + 22324452 AGAAAGCUUUAAAAUUGCACAUACGACCAGUGUGCCGAGUAUUCAUUGUUUUUAAACCAAACUAAUACCUUACGA-------- .(((.((((.......((((((.......)))))).)))).)))...............................-------- ( -9.20, z-score = -0.46, R) >droSec1.super_3 4050887 70 + 7220098 AACAAACUUUAAAAUUACGCAUACGAACAGUGCGCCAAGUAUUCAGAAUUC-----CUAAACUAAUACCUUAAAA-------- .......(((((.....(((((.......)))))....(((((.((.....-----.....))))))).))))).-------- ( -5.70, z-score = -0.76, R) >droSim1.chr2L 8345675 70 + 22036055 AACAAACUUUAAAAUUACGCAUACGACCAGUGUGCCAAGUAUUCAGAAUUC-----CCAAACUAAUACCUUAAAA-------- .......(((((......((((((.....))))))...(((((.((.....-----.....))))))).))))).-------- ( -8.70, z-score = -2.43, R) >anoGam1.chr3R 39611276 79 - 53272125 GAUAAAAUUUAAA----CGAAGUUAAACGGUAUUGGAAAUAUUCUCACCUAUUGAAUUAACGUAAACAUCAGCAAACACGGAA .............----((..(((((.(((((...((.......))...)))))..)))))((........)).....))... ( -4.60, z-score = 1.56, R) >consensus AACAAACUUUAAAAUUACGCAUACGACCAGUGUGCCAAGUAUUCAGAAUUC_____CCAAACUAAUACCUUAAAA________ ..................((((((.....))))))................................................ ( -3.90 = -4.32 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:20 2011