| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,559,531 – 20,559,640 |
| Length | 109 |
| Max. P | 0.759187 |
| Location | 20,559,531 – 20,559,640 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 62.74 |
| Shannon entropy | 0.73393 |
| G+C content | 0.45030 |
| Mean single sequence MFE | -28.31 |
| Consensus MFE | -7.71 |
| Energy contribution | -8.77 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.759187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20559531 109 - 27905053 ----AUAUUUAUAUUCCCAGUGCACUGUGCAUGUUCAUAUCGAGCAAUUCCCAGCUGAACUGCACUUGCCUCACCCCUAGAUUUAUUCCGUCGUUUUAGGAGAGGGAGGGGAG ----..........((((...(((..(((((.(((((......((........)))))))))))).)))(((.((((((((.............))))))...))))))))). ( -29.52, z-score = -1.04, R) >droSim1.chr3R 20392493 113 - 27517382 AUAUCUACAUAUAUUCCCAGUGCACUGUGCAUGUUCAUAUUGAGCAAUUCCCAGCUGCGCUGCACUUGCCUCUCCCCUAGAUUUAUUCCUUCGUUUUAGGGGAGGGAGCGGGU .................((((((((((.(..(((((.....)))))...).))).))))))).((((((((((((((((((.............)))))))))))).)))))) ( -43.72, z-score = -4.27, R) >droSec1.super_0 20895380 98 - 21120651 ----AUAUUUAUAUUCCCAG-----------UGUUCAUAUUGAGCAAUUCCCAGCUGCGCUGCACUUGCCUCUCCCCUAGAUUUAUUCCUUCGUUUUAGGGAAGGAAGGGGGU ----........((((((..-----------(((((.....))))).((((((((...))))............(((((((.............)))))))..)))))))))) ( -25.12, z-score = -0.28, R) >droYak2.chr3R 2892280 92 + 28832112 --AUGUAUUUUUAUGCCCAGUGCAGUGUGCAUGUUCAUAUUGAGCAAUUCCCAGCUGAGC------------------AGAUUUAUUCCUCUGCUUUCGCAGGGGGGUAGAG- --...........(((.((((((.....)).(((((.....))))).......)))).))------------------)..(((((((((((((....))))))))))))).- ( -31.60, z-score = -2.50, R) >droEre2.scaffold_4820 2970655 102 + 10470090 ----AUAUUUUUAUUCCCAGUGCAAUGUGCAUGUUCAUAUCGAGCAAUUCCCAGCUGAGCUGCACUCGCCUCUCCCCCAGAUUUAUUCCUCCGUUUCGGGGGAGGC------- ----......................(((((.(((((......((........))))))))))))..(((((.((((.((((..........)))).)))))))))------- ( -28.00, z-score = -1.46, R) >droAna3.scaffold_13340 19079999 97 + 23697760 ---------AUUAUUCCAAGUACAUUUUAUGUCUUUAUAGUUUA-AACUUCUAGCUUUUUUCUGCACAUUUCCCUCGCCAGUUUA-UCAUCCACCCAUGUUUUGGGUG----- ---------(((((...(((.((((...))))))).)))))...-........((........))....................-.....((((((.....))))))----- ( -11.90, z-score = -1.44, R) >consensus ____AUAUUUAUAUUCCCAGUGCACUGUGCAUGUUCAUAUUGAGCAAUUCCCAGCUGAGCUGCACUUGCCUCUCCCCUAGAUUUAUUCCUCCGUUUUAGGGGAGGGAG_GGG_ .................((((((.....)).(((((.....))))).......))))............................(((((((........)))))))...... ( -7.71 = -8.77 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:30 2011