| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,553,753 – 20,553,845 |
| Length | 92 |
| Max. P | 0.668518 |
| Location | 20,553,753 – 20,553,845 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 90.87 |
| Shannon entropy | 0.15861 |
| G+C content | 0.55000 |
| Mean single sequence MFE | -26.76 |
| Consensus MFE | -23.18 |
| Energy contribution | -23.54 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668518 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20553753 92 - 27905053 UCAACAGCCCUAUCUGAACCCGAUAGCCGUUGAAGUACACUCCCAUCGACGGUAGGUUCCCGCCUGUGGGCAUUUUCAGUUGCCACCUGAUC ......((((.....(((((.....((((((((.(........).)))))))).)))))........))))....((((.......)))).. ( -24.22, z-score = -1.05, R) >droEre2.scaffold_4820 2967269 92 + 10470090 UCCAUAGUCGUUUUUGAACCCGAUAGCCGUUGAAGCACACUGCCAUCGACGGUGGGUUCCCGCCCGUGGCCAUUUUCAGUUGCCACCUGAUC ......(((......((((((....((((((((.((.....))..))))))))))))))......(((((.((.....)).)))))..))). ( -29.20, z-score = -2.17, R) >droYak2.chr3R 2888912 92 + 28832112 UCUAUGGUCGCUUUCGAACCCGAUAGCCGUUGAAGUACACUGCCAUCGACGGUGGGUUCCCGCCUGUGGCCAUUUUCAGUCGCCACCUGAUC ...((((((((....((((((....((((((((.((.....))..))))))))))))))......))))))))..((((.......)))).. ( -31.40, z-score = -2.02, R) >droSec1.super_0 20892047 92 - 21120651 UCAACAGCCCUAUCUGAACCCGAUAGCCGUUGAAGUACACUGCCAUCGACGGUGGGUUCCCGCCUAUGGCCAUUUUCAGUUGCCACCUGAUC ....(((........((((((....((((((((.((.....))..)))))))))))))).......((((.((.....)).)))).)))... ( -25.10, z-score = -1.32, R) >droSim1.chr3R 20389132 92 - 27517382 UCAACAGCCCUAUCCGAACCCGAUAGCCGUUGAAGUACACUGCCAUCGACGGUGGGUUCCCGCCUAUGGUCAUUUUCAGUUGCCACCUGAUC ....(((........((((((....((((((((.((.....))..)))))))))))))).......((((.((.....)).)))).)))... ( -23.90, z-score = -0.94, R) >consensus UCAACAGCCCUAUCUGAACCCGAUAGCCGUUGAAGUACACUGCCAUCGACGGUGGGUUCCCGCCUGUGGCCAUUUUCAGUUGCCACCUGAUC ....(((........((((((....((((((((.((.....))..))))))))))))))......(((((.((.....)).))))))))... (-23.18 = -23.54 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:28 2011