| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,497,681 – 20,497,774 |
| Length | 93 |
| Max. P | 0.901327 |
| Location | 20,497,681 – 20,497,774 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 50.36 |
| Shannon entropy | 0.66774 |
| G+C content | 0.48315 |
| Mean single sequence MFE | -23.77 |
| Consensus MFE | -9.87 |
| Energy contribution | -8.77 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901327 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20497681 93 + 27905053 GCCAAUUGGCU--UUGCUGUUUGGCAGACAGCGUC--GAAUUUCCUUUCCUUUCUCUUUGUUACCAUAUAUGUAUGAAUGUAUGUAUGUGUACGGCG (((..(((((.--..((((((.....)))))))))--))....................((...(((((((((((....))))))))))).))))). ( -24.40, z-score = -2.16, R) >droEre2.scaffold_4820 2909525 73 - 10470090 GCCAAUUGGCU--UUGCUGUUUGGCAGACAGCGUC--GAAUUUCCUUUCCCUUCCCGUUGUUACGAUGUGUAC-UGCG------------------- (((....))).--..........(((((((.((((--((((..(............)..))).)))))))).)-))).------------------- ( -17.10, z-score = -0.96, R) >droGri2.scaffold_14906 8661338 86 - 14172833 GCCAGUUGGCUGGCAGACAGUGGCCAAAUGCUUUCUGGCAUUGCAGCUGUUGGCCGCUUUUUUAGAUGCCUUUCUACACGUAGACG----------- (((((....))))).((((((.((..((((((....)))))))).))))))(((..((.....))..)))..((((....))))..----------- ( -29.80, z-score = -1.19, R) >consensus GCCAAUUGGCU__UUGCUGUUUGGCAGACAGCGUC__GAAUUUCCUUUCCUUUCCCCUUGUUACGAUGUAUAU_UGCA_GUA_______________ (((....)))....(((((((.....)))))))................................................................ ( -9.87 = -8.77 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:22 2011