| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,472,603 – 20,472,701 |
| Length | 98 |
| Max. P | 0.987548 |
| Location | 20,472,603 – 20,472,701 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 74.93 |
| Shannon entropy | 0.45789 |
| G+C content | 0.68640 |
| Mean single sequence MFE | -55.85 |
| Consensus MFE | -33.62 |
| Energy contribution | -33.81 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.34 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.28 |
| SVM RNA-class probability | 0.987548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20472603 98 - 27905053 CCGCUGCUGCAGCGGCUACCGGAACUGCACAGCAAACGCUGGUGGCAAUGAACCGGCAGGCCAGCGUUGCUGCAGCUGCCGCCGUGGUU---GCUGCGGCC------------ .....(((((((((((((((((..(((((..((((.(((((((.((.........))..))))))))))))))))...)))..))))))---)))))))).------------ ( -53.90, z-score = -2.15, R) >droWil1.scaffold_181089 2740507 113 + 12369635 CUGCUGCCGCUGUGGCCACUGGAACGGCACAACAAUCUCUGGUUGCCAUGCGGCAACAGGCGAAUGCAGCUGCAGCGGCUGCUGCCGCCGCUGCUGUUGUCCAGGCGUCCGUG (((.((((((.(((((.((..((..............))..)).))))))))))).)))(((..((((((.((((((((.......)))))))).))))..))..)))..... ( -53.24, z-score = -1.03, R) >droPer1.super_7 2526519 104 + 4445127 CCGCUGCCGCCGUGGCAACAGACAAUGCGCAGCAAUCGCUGGUGGCCACCAUGCGGCAGGCGAAUGCCAAUGCAGCUGCGGCCGUGGCUGCGGCUGCGGCCAAC--------- .(((((((((.(((((..(((....(((...)))....)))...)))))...)))))).)))...(((...(((((((((((....))))))))))))))....--------- ( -56.80, z-score = -1.75, R) >dp4.chr2 29029027 104 + 30794189 CCGCUGCCGCCGUGGCAACAGACAAUGCGCAGCAAUCGCUGGUGGCCACCAUGCGGCAGGCGAAUGCCAAUGCAGCUGCGGCCGUGGCUGCGGCUGCGGCCAAC--------- .(((((((((.(((((..(((....(((...)))....)))...)))))...)))))).)))...(((...(((((((((((....))))))))))))))....--------- ( -56.80, z-score = -1.75, R) >droEre2.scaffold_4820 2884020 98 + 10470090 CCGCUGCUGCGGCGGCUACCGGUACUGCCCAGCAAACGCUGGUGGCGAUGAACCGUCAGGCCAGCGUUGCUGCAGCCGCCGCCGUGGUU---GCUGCGGCC------------ .....((((((((((((((((((.((((..(((((.(((((((((((......))))..))))))))))))))))..))))..))))))---)))))))).------------ ( -56.80, z-score = -2.84, R) >droSec1.super_0 20806989 98 - 21120651 CCGCUGCUGCAGCAGCUACCGGAACUGCUCAGCAAACGCUGGUGGCGAUGAACCGGCAAGCCAGCGUUGCUGCAGCUGCCGCCGUGGUU---GCUGCGGCC------------ .....(((((((((((((((((....(((((((((.((((((((.((......)).)..))))))))))))).)))..)))..))))))---)))))))).------------ ( -57.10, z-score = -3.69, R) >droSim1.chr3R 20311452 98 - 27517382 CCGCUGCUGCAGCGGCUACCGGAACUGCUCAGCAAACGCUGGUGGCGAUGAACCGGCAGGCCAGCGUUGCUGCAGCUGCCGCCGUGGUU---GCUGCGGCC------------ .....(((((((((((((((((....(((((((((.((((((((.((......)).)..))))))))))))).)))..)))..))))))---)))))))).------------ ( -56.30, z-score = -2.84, R) >consensus CCGCUGCUGCAGCGGCUACCGGAACUGCACAGCAAACGCUGGUGGCCAUGAACCGGCAGGCCAGCGUUGCUGCAGCUGCCGCCGUGGUU___GCUGCGGCC____________ ..(((((.((((((((..........)).((((....)))).((((.............)))).)))))).)))))....((((((((....))))))))............. (-33.62 = -33.81 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:20 2011