Locus 11348

Sequence ID	dm3.chr3R
Location	20,455,805 – 20,455,899
Length	94
Max. P	0.572729

overview

Window 5

Location	20,455,805 – 20,455,899
Length	94
Sequences	9
Columns	107
Reading direction	forward
Mean pairwise identity	75.51
Shannon entropy	0.47542
G+C content	0.50780
Mean single sequence MFE	-22.62
Consensus MFE	-11.60
Energy contribution	-11.96
Covariance contribution	0.36
Combinations/Pair	1.16
Mean z-score	-1.42
Structure conservation index	0.51
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.16
SVM RNA-class probability	0.572729
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 20455805 94 + 27905053
UCUCGGCAACCGUGUUUCCAUUUCCAGUUGACUAAUCG-CUCUGCCGACGUCGACGCAGGCCGC------------ACAACUGUUGCUGUUACUCUCCAACACCUUU
...(((((((.((((..((.......((((((...(((-......))).))))))...))..))------------))....))))))).................. ( -20.50, z-score =  -0.54, R)
>droSim1.chr3R 20294525 94 + 27517382
UCUCGGCAACCGUGUUUCCAUUUCCAGUUGACUAAUCG-CUCUGUCGACGUCGACGCAGGCCGU------------ACAACUGUUGCUGUUACUCUCCAACACCUUU
...(((((((.((.............((((((......-....))))))(((......)))...------------...)).))))))).................. ( -19.30, z-score =  -0.23, R)
>droSec1.super_0 20790206 94 + 21120651
UCUCGGCAACCGUGUUUCCAUUUCCAGUUGACUAAUCG-CUCUGCCGACGUCGACGCAGGCCGC------------ACAACUGUUGCUGUUACUCUCCAACACCUUU
...(((((((.((((..((.......((((((...(((-......))).))))))...))..))------------))....))))))).................. ( -20.50, z-score =  -0.54, R)
>droYak2.chr3R 2790080 88 - 28832112
UCUCGGCAACCGUGUUU------CCAGUUGACUAAUCG-CUCUGCCGACGUCGACGCAGCCCGC------------ACAACUGUUGCUGUUACUUUCCAACACCUUU
...(((((((.((....------...((((((...(((-......))).))))))((.....))------------...)).))))))).................. ( -19.90, z-score =  -0.88, R)
>droEre2.scaffold_4820 2867201 88 - 10470090
UCUCGGCAACCGUGUUU------CCAGUUGACUAAUCG-CUCUGCCGACGUCGACGCAGGCCAC------------ACAACUGUUGCUGUUACUUUCCAACACCUUU
...(((((((.((((..------((.((((((...(((-......))).))))))...))..))------------))....))))))).................. ( -22.00, z-score =  -1.39, R)
>dp4.chr2 29012138 89 - 30794189
UCUCAGCAACCGUUUCA---UUUCCAGUUGACUAAUCGGCUCUGCCGGCGUCGACGCUGGC---------------ACAACUGUUGCUGUUACUUUUCAAUUUCGUU
...(((((((.(((...---.....((((((....)))))).((((((((....)))))))---------------).))).))))))).................. ( -29.30, z-score =  -3.91, R)
>droPer1.super_7 2509318 89 - 4445127
UCUCAGCAACCGUUUCA---UUUCCAGUUGACUAAUCGGCUCUGCCGGCGUCGACGCUGGC---------------ACAACUGUUGCUGUUACUUUUCAAUUUCGUU
...(((((((.(((...---.....((((((....)))))).((((((((....)))))))---------------).))).))))))).................. ( -29.30, z-score =  -3.91, R)
>droWil1.scaffold_181089 2723147 79 - 12369635
UCUCGGCAACCAU--------UUCCAGUUGACUAAUCG-CUCUGCCGACUCCGACUGCGGCAGCG------UUAUGAGAACCUUUUGUGCUGUU-------------
((((((((((...--------.....)))).))....(-(.((((((.(.......))))))).)------)...))))...............------------- ( -18.50, z-score =  -0.15, R)
>droGri2.scaffold_14906 8605818 97 - 14172833
UCUCAGCAACGAU---------UCCAGUUGACUAAUCA-UGCUGCUUGCGUCGACGCUGGCGUCACUGUCAUUGUCACAACUGUUGCUGUUACUUUCCAUUUAUGUU
...((((((((..---------..)(((((.......(-(((.....)))).((((.(((((....))))).)))).)))))))))))).................. ( -24.30, z-score =  -1.23, R)
>consensus
UCUCGGCAACCGUGUUU___UUUCCAGUUGACUAAUCG_CUCUGCCGACGUCGACGCAGGCCGC____________ACAACUGUUGCUGUUACUUUCCAACACCUUU
...(((((((.((.............((((((...(((.......))).))))))(....)..................)).))))))).................. (-11.60 = -11.96 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:17 2011