| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,454,802 – 20,454,905 |
| Length | 103 |
| Max. P | 0.588030 |
| Location | 20,454,802 – 20,454,905 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 76.40 |
| Shannon entropy | 0.45620 |
| G+C content | 0.47792 |
| Mean single sequence MFE | -32.00 |
| Consensus MFE | -17.62 |
| Energy contribution | -17.15 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20454802 103 + 27905053 UGGAGUAGUAAUGUUAUUGGUUAGGAUUCUCGUUA--GAAUUCAAGCAUUACCAACCUCCGUGGUGGCUUCUAUCGAGGCCUGUCCGCAUUCAGAUUGACCUACU .((((..((((((((........(((((((....)--)))))).))))))))....))))((((.((((((....))))))...))))................. ( -30.30, z-score = -1.71, R) >droSim1.chr3R 20293524 103 + 27517382 UGGAAUAGUAAUAUUAUUGGUUAGGAUUCUCGUUG--GUAUUCGAGCAGUACCAACCUCUGUGGUGGCUUCUAUUGAGGCCUGCCCGCAUUCAGAUUGACCUGCU ...((((....))))...((((((.......((((--(((((.....)))))))))...(((((.((((((....))))))...)))))......)))))).... ( -31.80, z-score = -1.47, R) >droSec1.super_0 20789203 103 + 21120651 UGGAGUAGUAAAGAUUUUGGUUAGGAUUCUCGUUG--GUAUUCGAGCAGUACCAACCUCUGUGGUGGCUUCUAUUGAGGCCUGCCCGCAUUCAGAUUGCCCUGCU .((.(((((...((....((((.(((((((((...--.....)))).))).))))))..(((((.((((((....))))))...))))).))..))))))).... ( -32.60, z-score = -1.15, R) >droYak2.chr3R 2789037 103 - 28832112 UGGAGUAGGAGUCGUAUUGGUUGGGAUUUUCGUUU--GUAUUCAAGCAGUACCAACCUCUGUGGUGGCUUCUAUGGAGGCCUGGCCGCAUUCAGAUUGACCUGCU ...((((((((((.....(((((((.....)((((--(....)))))....))))))..((((((((((((....))))))..))))))....))))..)))))) ( -38.40, z-score = -2.39, R) >droEre2.scaffold_4820 2866173 103 - 10470090 UGGAGUAGAAGUCGUAUUGAUUAGGAUGCUCGUUG--GCAUUCAAGCAGCACCAACCUCUGUGGUGGCUUCUAUGGAGGCCUGUCCGCAUUCAGAUUGACCUGCU ...(((((..((((..((((...((.((((.(((.--.......)))))))))......(((((.((((((....))))))...))))).))))..))))))))) ( -33.50, z-score = -0.70, R) >droAna3.scaffold_13340 18977595 96 - 23697760 ---------GAAUACGAGGAUUAGGACUGUCUGUAAAGUAAACUGACAUUGUGUACCUCCGUGUUGGCUUCCACCGAAGCUUGGCCACAUUCAGUCUGAUCCAGC ---------........(((((((.((((..(((...(((.((.......)).)))..(((....((((((....)))))))))..)))..)))))))))))... ( -25.40, z-score = -0.80, R) >consensus UGGAGUAGUAAUCAUAUUGGUUAGGAUUCUCGUUG__GUAUUCAAGCAGUACCAACCUCUGUGGUGGCUUCUAUCGAGGCCUGCCCGCAUUCAGAUUGACCUGCU ..................((((((.............((......)).............((((.((((((....))))))...)))).......)))))).... (-17.62 = -17.15 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:16 2011