| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,447,662 – 20,447,734 |
| Length | 72 |
| Max. P | 0.965863 |
| Location | 20,447,662 – 20,447,734 |
|---|---|
| Length | 72 |
| Sequences | 5 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 90.01 |
| Shannon entropy | 0.17635 |
| G+C content | 0.45456 |
| Mean single sequence MFE | -12.43 |
| Consensus MFE | -11.94 |
| Energy contribution | -11.46 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.76 |
| SVM RNA-class probability | 0.965863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20447662 72 + 27905053 CUUCUGCUUUAA-CCCUUUCUACUUCAAUGGAAUUUCCUCUGGCUGAAACUCUGGAUUUCGCCA-CGCACUUUC ....(((.....-....(((((......))))).......((((.(((((....).))))))))-.)))..... ( -10.20, z-score = -1.39, R) >droSim1.chr3R 20286404 72 + 27517382 CUUCUGCUUUAA-CCCUUUCUACUUCAAUGGAAUUUCCUCUGGCUGAAACUCUGGGUUUCGCCG-CGCACUUUC ....(((.....-....(((((......)))))........(((.(((((.....)))))))).-.)))..... ( -13.50, z-score = -1.72, R) >droSec1.super_0 20782092 72 + 21120651 CUUCUGCUUUAA-CCCUUUAUACUUCAAUGGAAUUUCCUCUGGCUGAAACUCUGGGUUUCGCCA-CGCACUUUC ....(((.....-................((.....))..((((.(((((.....)))))))))-.)))..... ( -13.60, z-score = -2.23, R) >droYak2.chr3R 2780979 74 - 28832112 CUUCUGCUUUUCCCCCUUUCUACUUCAAUGGAAUUUCCGCUUGCUGAAACCUUGAGUUUCGCAAACGCACUUUC ....(((......................((.....))(.((((.(((((.....))))))))).))))..... ( -11.70, z-score = -1.78, R) >droEre2.scaffold_4820 2859061 73 - 10470090 CUUCUGCUUUCCUCCCUUUCUACAUCAAUGGAAUUUCCUCUUGCUGAAACCUUGGGUUUCGCGA-CGCACUUUC ....(((.((((.................)))).......((((.((((((...))))))))))-.)))..... ( -13.13, z-score = -1.98, R) >consensus CUUCUGCUUUAA_CCCUUUCUACUUCAAUGGAAUUUCCUCUGGCUGAAACUCUGGGUUUCGCCA_CGCACUUUC ....(((......................((.....))..((((.(((((.....)))))))))..)))..... (-11.94 = -11.46 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:15 2011