| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,431,432 – 20,431,529 |
| Length | 97 |
| Max. P | 0.580761 |
| Location | 20,431,432 – 20,431,529 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 72.76 |
| Shannon entropy | 0.49513 |
| G+C content | 0.52108 |
| Mean single sequence MFE | -32.74 |
| Consensus MFE | -14.76 |
| Energy contribution | -15.24 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.580761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20431432 97 + 27905053 AGAAAGCGACACAAAUUGCAGGUGACAGACCGCAAGAGUGGGCGUCGU--------AUUGGAUGGA--AUGGGUUUGGAUAUAAUGUGUGCAUCCUCGUUUUAUCCU .....(((((.((..((((.(((.....)))))))...))...)))))--------...(((((((--(((((..((.((((...)))).))..)))))))))))). ( -33.60, z-score = -2.99, R) >droAna3.scaffold_13088 473602 103 + 569066 AGGAAACGACACAAAUUGCAGGUGGCAUGCCACAAGAGUGGGCGGUUGGACGGCCAUCCGGGCGGC---CGGGCGGUCUUCCUGACUGCACAUCCCCACUU-AUCCC .(((.................((((....))))..(((((((((((((..(((....)))..))))---)).((((((.....)))))).....)))))))-.))). ( -42.40, z-score = -1.25, R) >droYak2.chr3R 2764327 96 - 28832112 AGAAAGCGACACAAAUUGCAGGUGACAGACCGCAAGAGUGGGUGG-----------AGCGGGAGGGUCGGGAGGAGAAGGAUAAUGUGUGCAUCCUCGUUUUAUCCU ......((((.(...((((.(....)...((((....))))....-----------.))))...)))))(((..((((.((..(((....)))..)).)))).))). ( -25.70, z-score = -0.40, R) >droSec1.super_0 20765408 95 + 21120651 AGAAAGCGACACAAAUUGCAGGUGACAGACCGCAAGAGUGGGCGU-----------AUUGGAUGGGA-AUGGGAGGGCAUAUAAUGUGUGCAUCCUCGUUUUAUCCU .....(((.(((...((((.(((.....)))))))..)))..)))-----------...((((((((-..((((..((((((...)))))).))))..)))))))). ( -31.80, z-score = -2.60, R) >droSim1.chr3R 20269478 107 + 27517382 AGAAAGCGACACAAAUUGCAGGUGACAGACCGCAAGAGUGGGCGUAUUGGAUGGCAAUGGGAUGGGGGAUGGGGUGGGAUAUAAUGUGUGCAUCCUCGUUUUAUCCU .....((.(..(((..(((.(....)...((((....)))))))..)))..).))...(((((((..(((((((..(.((((...)))).)..)))))))))))))) ( -30.20, z-score = -0.77, R) >consensus AGAAAGCGACACAAAUUGCAGGUGACAGACCGCAAGAGUGGGCGU___________AUCGGAUGGG__AUGGGGGGGCAUAUAAUGUGUGCAUCCUCGUUUUAUCCU ......((.(((...((((.(((.....)))))))..)))..))...............(((((((..(((((.....................)))))))))))). (-14.76 = -15.24 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:11 2011