| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,429,795 – 20,429,886 |
| Length | 91 |
| Max. P | 0.654376 |
| Location | 20,429,795 – 20,429,886 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 93.48 |
| Shannon entropy | 0.08983 |
| G+C content | 0.34902 |
| Mean single sequence MFE | -13.30 |
| Consensus MFE | -12.89 |
| Energy contribution | -12.67 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20429795 91 - 27905053 UGUGAUUUGGAAUUAGCGUGCUGUUGCUGAUGAUUUGGACGCAACACAGAGAGAAAAAA-AGAAAACAAUAAACAAAUAAAUGAAGAAAAAG ((((.((..(((((((((......)))))))..))..))))))................-................................ ( -12.40, z-score = -1.11, R) >droSim1.chr3R 20267923 92 - 27517382 UGUGAUUUGGAAUUAGCGUGCUGUUGCUGAUGAUUUGGACACAACACGGAGCGAAAAAACCGAAAACAAUAAACAAAUAAAUGAGGAAAAGA ((((.((..(((((((((......)))))))..))..))))))...(((..........))).............................. ( -14.70, z-score = -1.01, R) >droSec1.super_0 20763858 92 - 21120651 UGUGAUUUGGAAUUAGCGUGCUGUUGCUGAUGAUUUGGACACAACACGAAGAGAAAAAACCGAAAACAAUAAACAAAUAAAUGAGGAAAAGA ((((.((..(((((((((......)))))))..))..))))))................................................. ( -12.80, z-score = -1.04, R) >consensus UGUGAUUUGGAAUUAGCGUGCUGUUGCUGAUGAUUUGGACACAACACGGAGAGAAAAAACCGAAAACAAUAAACAAAUAAAUGAGGAAAAGA ((((.((..(((((((((......)))))))..))..))))))................................................. (-12.89 = -12.67 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:10 2011