| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,427,423 – 20,427,492 |
| Length | 69 |
| Max. P | 0.929065 |
| Location | 20,427,423 – 20,427,492 |
|---|---|
| Length | 69 |
| Sequences | 5 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 58.20 |
| Shannon entropy | 0.73119 |
| G+C content | 0.52935 |
| Mean single sequence MFE | -19.78 |
| Consensus MFE | -8.50 |
| Energy contribution | -10.90 |
| Covariance contribution | 2.40 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.929065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20427423 69 - 27905053 ------GGAUGCGGAUUCACAUUCAGAUUCGCAUUCGGAUGUGGAUGUGGAUUUCGGGCGAGGUUUCGGGUGUGG ------..((((.((((((((((((.(((((....))))).))))))))))))(((((......))))))))).. ( -21.70, z-score = -1.65, R) >droAna3.scaffold_13088 469249 59 - 569066 ------GGAGGCACUUGCGAGAUC---UGCCGUCCCGUCUGCCAGUCCGCCCGUCCAAUCCGAUUUGG------- ------(((((((...(((.(((.---....))).))).))))..)))......((((......))))------- ( -13.80, z-score = 0.66, R) >droSec1.super_0 20761548 75 - 21120651 GGAUGCGGAUUCACAUUCACAUUCAGAUUCGCAUUCGGAUGUGGAUGUGGAUUUCGGGCGAGGAUUCGGGUGUGG ..((.(((((((..(((((((((((.(((((....))))).))))))))))).((....))))))))).)).... ( -26.50, z-score = -2.55, R) >droSim1.chr3R 20265595 75 - 27517382 GGAUGCGGAUUCACAUUCACAUUCAGAUUCGCAUUCGGAUGUGGAUGUGGAUUUCGGGCGAGGAUUCGGGUGUGG ..((.(((((((..(((((((((((.(((((....))))).))))))))))).((....))))))))).)).... ( -26.50, z-score = -2.55, R) >droMoj3.scaffold_6680 7477757 68 + 24764193 ------GGAUGCAGAUUCAGAUUCAGAUGCAGAUCCAGAUGGAGAUGGAGA-UAGAGAUAGAAAUACAGGUGCAA ------...((((..((((..((((..((......))..))))..))))..-......((....))....)))). ( -10.40, z-score = -0.12, R) >consensus ______GGAUGCACAUUCACAUUCAGAUUCGCAUUCGGAUGUGGAUGUGGAUUUCGGGCGAGGAUUCGGGUGUGG ............(((((((((((((.((((......)))).)))))))))))))..................... ( -8.50 = -10.90 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:09 2011