| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,557,169 – 8,557,270 |
| Length | 101 |
| Max. P | 0.555293 |
| Location | 8,557,169 – 8,557,270 |
|---|---|
| Length | 101 |
| Sequences | 11 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 71.39 |
| Shannon entropy | 0.54882 |
| G+C content | 0.28799 |
| Mean single sequence MFE | -12.70 |
| Consensus MFE | -6.56 |
| Energy contribution | -5.83 |
| Covariance contribution | -0.73 |
| Combinations/Pair | 1.60 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.555293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8557169 101 + 23011544 CAGCGCCAACAAUAAUAAUUCUCAUUCGAAAUCUCGUAAAUCAAUGUUUUUUUUUUGUU---UCUCUCUACAUUCUAAUUAU-GUGAUUAAGUGAUUUAUGAGUU------------- ................................(((((((((((............(((.---.......)))...(((((..-..)))))..)))))))))))..------------- ( -12.30, z-score = -0.17, R) >droPer1.super_5 1279726 91 - 6813705 --UCCCCGGCAA--AUAAUUCGCUUUCAAAAUCUCGUAAAUCAAU----UCUUUUUUUC-----UUCCCACAUUCUAAUUAU-GUGAUUAAGUGAUUUAUGACUU------------- --.....(((..--.......))).........((((((((((..----.........(-----((..(((((.......))-)))...)))))))))))))...------------- ( -11.40, z-score = -1.65, R) >dp4.chr4_group5 1310540 91 - 2436548 --UCCCCGGCAA--AUAAUUCGCAUUCAAAAUCUCGUAAAUCAAU----UCUUUUUUUC-----UUCCCACAUUCUAAUUAU-GUGAUUAAGUGAUUUAUGACUU------------- --......((..--.......))..........((((((((((..----.........(-----((..(((((.......))-)))...)))))))))))))...------------- ( -11.10, z-score = -1.41, R) >droAna3.scaffold_12916 10202915 88 + 16180835 CACCGCCAACAGCAAUAAUUCGCAUUCAAAAUCUCGUAAAUCAAU----UUUUUUCU------------ACAUUCUAAUUAU-GUGAUUAAGUGAUUUAUGGGUU------------- ...........((........)).........(((((((((((..----.((..((.------------((((.......))-))))..)).)))))))))))..------------- ( -15.10, z-score = -2.04, R) >droEre2.scaffold_4929 9152942 90 + 26641161 CAGCGCCAACAAUAAUAAUGCUCAUUUGAAAUCUCGUAAAUCAAU--UUUUUUUUCU------------ACAUUCUAAUUAU-GUGAUUAAGUGAUUUAUGAGUU------------- .((((.............))))..........(((((((((((..--..(((..((.------------((((.......))-))))..))))))))))))))..------------- ( -13.92, z-score = -0.96, R) >droYak2.chr2L 11203789 94 + 22324452 CAGCGCCAACAAUAAUAAUUCUCAUUCGAAAUCUCGUAAAUCAAU-UUUUUUUUUCU---------UCUACAUUCUAAUUAU-GUGAUUAAGUGAUUUAUGAGUU------------- ................................(((((((((((..-......(((..---------((.((((.......))-))))..))))))))))))))..------------- ( -12.10, z-score = -0.81, R) >droSec1.super_3 4044478 104 + 7220098 CAGCGCCAACAAUAAUAAUUCUCAUUCGAAAUCUCGUAAAUCAAUGUUUUUUUUUCUCUCUCUCUCUCUACAUUCUAAUUAU-GUGAUUAAGUGAUUUAUGAGUU------------- ................................(((((((((((((((......................))))..(((((..-..)))))..)))))))))))..------------- ( -11.25, z-score = -0.24, R) >droSim1.chr2L 8336549 104 + 22036055 CAGCGCCAACAAUAAUAAUUCUCAUUCGAAAUCUCGUAAAUCAAUGUUUUUUUUUCUCUCUCUCUCUCUACAUUCUAAUUAU-GUGAUUAAGUGAUUUAUGAGUU------------- ................................(((((((((((((((......................))))..(((((..-..)))))..)))))))))))..------------- ( -11.25, z-score = -0.24, R) >droVir3.scaffold_12963 14386578 77 - 20206255 --------GCAAC-AACAUUCGCAUUGAAAAUCUCGUAAAUCAAU----UUUUAU--------------ACAUUCUAAUUAU-GUGAUUAAGUGAUUUAUGACCU------------- --------((...-.......))..........((((((((((..----.....(--------------((((.......))-)))......))))))))))...------------- ( -11.82, z-score = -1.53, R) >droGri2.scaffold_15252 7632294 79 + 17193109 ------CAGCAAC-AGCAUUCGCAUUGAAAAUCUCGUAAAUCAAU----UUUUAU--------------ACAUUCUAAUUAU-GUGAUUAAGUGAUUUAUGACCU------------- ------..((...-.))................((((((((((..----.....(--------------((((.......))-)))......))))))))))...------------- ( -12.92, z-score = -1.27, R) >apiMel3.GroupUn 310329050 116 + 399230636 CGGUGCAAUAAAUAAAUAUUCUUGUUCAAAAUAUGAUUUACAAAU--GUUUCUUAUUGAUGCUUGCUUCUCGCCCUAAUAAAAGUGCACUUUUUGUGCAUUAAUUUAACUCAAAAAUU .((((((((((..(((((((..((((((.....)))...))))))--)))).))))))..(....)....))))........(((((((.....)))))))................. ( -16.50, z-score = -0.50, R) >consensus CAGCGCCAACAAUAAUAAUUCUCAUUCAAAAUCUCGUAAAUCAAU___UUUUUUUCU_________UC_ACAUUCUAAUUAU_GUGAUUAAGUGAUUUAUGAGUU_____________ .................................((((((((((.................................................))))))))))................ ( -6.56 = -5.83 + -0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:18 2011