Locus 11337

Sequence ID dm3.chr3R
Location 20,422,940 – 20,423,048
Length 108
Max. P 0.576293
window15592

overview

Window 2

Location 20,422,940 – 20,423,048
Length 108
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 81.93
Shannon entropy 0.29429
G+C content 0.41044
Mean single sequence MFE -28.85
Consensus MFE -19.70
Energy contribution -21.07
Covariance contribution 1.37
Combinations/Pair 1.21
Mean z-score -1.68
Structure conservation index 0.68
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.17
SVM RNA-class probability 0.576293
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 20422940 108 + 27905053
GAUCUAUUGUAUUUCGGGUGAUGCUUUAAUUAACCAAAACGAAUCACAAUGGAAAUCACAUCCUGGGAAACUACCGUACAUAAGUGCGUGUGCUUGUGU----GUGGACAAU
..((((((((..((((((((((......))).)))....))))..))))))))..........(((....)))(((((((((((((....)))))))))----))))..... ( -30.70, z-score =  -2.40, R)
>droEre2.scaffold_4820 2834697 94 - 10470090
AACCCAUUGUAUUUCGGGUGAUGCUUUAAUUAACCAAAACGAAUGACAAUGGAAAUCACGUCCUGGGAAACUGGCAUAAGUGUGUGCGGACAAA------------------
...(((((((..((((((((((......))).)))....))))..))))))).......((((.((....)).(((((....)))))))))...------------------ ( -27.30, z-score =  -2.24, R)
>droSec1.super_0 20757162 110 + 21120651
GAGCUAUUGUAUUUCGGGUGAUGCUUUAAUUAACCAAAACGAAUCACAAUGGAAAUCACAUCCUGGGAAACUACCGUACAUAGGUGCGUGUGCUUCUGUUU--GUGGACAAU
...(((((((..((((((((((......))).)))....))))..)))))))...(((((..((((....)))..((((((......))))))....)..)--))))..... ( -26.10, z-score =  -0.62, R)
>droSim1.chr3R 20261175 112 + 27517382
GAGCUAUUGUAUUUCGGGUGAUGCUUUAAUUAACCAAAACGAAUCACAAUGGAAAUCACAUCCUGGGAAACUACCGUGCAUAAGUGCGUGUGCUUGUGUGUGUGUGGACAAU
((.(((((((..((((((((((......))).)))....))))..)))))))...))...(((.((....))((((..((((((((....))))))))..)).))))).... ( -31.30, z-score =  -1.46, R)
>consensus
GAGCUAUUGUAUUUCGGGUGAUGCUUUAAUUAACCAAAACGAAUCACAAUGGAAAUCACAUCCUGGGAAACUACCGUACAUAAGUGCGUGUGCUUGUGU____GUGGACAAU
...(((((((..((((((((((......))).)))....))))..)))))))...((((....(((....)))....(((((((((....)))))))))....))))..... (-19.70 = -21.07 +   1.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:06 2011