| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,420,318 – 20,420,415 |
| Length | 97 |
| Max. P | 0.541071 |
| Location | 20,420,318 – 20,420,415 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 75.95 |
| Shannon entropy | 0.41407 |
| G+C content | 0.39405 |
| Mean single sequence MFE | -24.16 |
| Consensus MFE | -12.66 |
| Energy contribution | -12.18 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20420318 97 - 27905053 -ACUGUAUAAACUGAAAGACG-AAAAACGAAAGUCUCGUUUUAUUUUGCC-AUUCAAUUGGCAGGCA--------AAAUA--CACAU--AU---CCCGGAAGCGGUUUCGAGAAA -..(((((.......((((((-(...((....)).)))))))..((((((-(......)))))))..--------..)))--))...--..---.(((....))).......... ( -22.50, z-score = -1.72, R) >droSim1.chr3R 20258909 99 - 27517382 -------UAAACUGAAAGACG-AAAAACGAAAGUCUCGUUGUAUUUCGCC-AUUCAAUUGGCAGGCAAAAUACACAUAUG-UGCCAU--AU---CCCGGAAGUGGUUACUAAAA- -------......((((.(((-(...((....))....)))).))))(((-(......)))).((((..(((....))).-))))..--..---(((....).)).........- ( -21.90, z-score = -1.55, R) >droSec1.super_0 20754883 99 - 21120651 -------UAAACUGAAAGACG-AAAAACGAAAGUCUCGUUUUAUUUCGCC-AUUCAAUUGGCGGGCAAAAUACACAUAUG-UGCCAU--AU---CCCGGAAGUGGUUACUAAAA- -------..((((..((((((-(...((....)).)))))))((((((((-(......))))(((.......(((....)-))....--..---))).))))))))).......- ( -24.62, z-score = -2.28, R) >droYak2.chr3R 2753068 103 + 28832112 -------UAAACUGAAAGACGAAAAAACGAAAGUCUCGUUUUAUUUUGCC-UUACAAUUGGCAGGCAGGCGAAAGAAAUAAUCACAUUAAU---CCCGGAAGCGGUUUCGAAAU- -------....(((.(((((((....((....)).)))))))..((((((-........))))))))).(((((((.....))........---.(((....))))))))....- ( -23.30, z-score = -1.57, R) >droEre2.scaffold_4820 2832444 113 + 10470090 ACAACUAUAAGCUGGCAGACG-AAAAACGAAAGUCUCGUUUUAAUUCGCCUUUUCAAUUGGCGAGCAGGCAAAGUACAUACGUACGUAAAUCCCCCCGGAAGCGGUUUCGAAAA- ..........(((.(((((((-(...((....)).))))))....(((((.........))))))).)))...((((....))))..........(((....))).........- ( -28.50, z-score = -1.19, R) >consensus _______UAAACUGAAAGACG_AAAAACGAAAGUCUCGUUUUAUUUCGCC_AUUCAAUUGGCAGGCAAAAUAAACAAAUA_UCACAU__AU___CCCGGAAGCGGUUUCGAAAA_ .........(((((.....((..(((((((.....)))))))..((((((.........))))))...............................))....)))))........ (-12.66 = -12.18 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:05 2011