| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,419,749 – 20,419,800 |
| Length | 51 |
| Max. P | 0.633720 |
| Location | 20,419,749 – 20,419,800 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 92.29 |
| Shannon entropy | 0.12537 |
| G+C content | 0.40920 |
| Mean single sequence MFE | -8.56 |
| Consensus MFE | -7.96 |
| Energy contribution | -7.96 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633720 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20419749 51 - 27905053 CCCAUAAGGUCAAAGCAUUUUUAAUGCAACACCUUGAGAAU-----CAACGGUCAC ....((((((....((((.....))))...)))))).....-----.......... ( -8.00, z-score = -1.08, R) >droSim1.chr3R 20258377 51 - 27517382 CCCAUAAGGUCAAAGCAUUUUUAAUGCAACACCUUGAGAAU-----CAACGGUCAC ....((((((....((((.....))))...)))))).....-----.......... ( -8.00, z-score = -1.08, R) >droSec1.super_0 20754351 51 - 21120651 CCCAUAAGGUCAAAGCAUUUUUAAUGCAACACCUUGAGAAU-----CAACGGUCAC ....((((((....((((.....))))...)))))).....-----.......... ( -8.00, z-score = -1.08, R) >droYak2.chr3R 2752487 55 + 28832112 -CCCUAAGGUCAAAGCAUUUUUAAUGCAACACCUUGAGAAUCGAAACAACGGUCAU -...((((((....((((.....))))...)))))).((.(((......))))).. ( -9.30, z-score = -1.27, R) >droEre2.scaffold_4820 2831905 56 + 10470090 CCCAUAAGGUCAAAGCAUUUUUAAUGCAACACCUUGAGAAUCGAAACAACGGUCAC ....((((((....((((.....))))...)))))).((.(((......))))).. ( -9.50, z-score = -1.49, R) >consensus CCCAUAAGGUCAAAGCAUUUUUAAUGCAACACCUUGAGAAU_____CAACGGUCAC ....((((((....((((.....))))...)))))).................... ( -7.96 = -7.96 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:04 2011