| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,418,981 – 20,419,096 |
| Length | 115 |
| Max. P | 0.853300 |
| Location | 20,418,981 – 20,419,096 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 66.27 |
| Shannon entropy | 0.63307 |
| G+C content | 0.33792 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -11.03 |
| Energy contribution | -11.45 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.853300 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20418981 115 - 27905053 UAGCAAAGUUCUCAUUGCCUUCUCAACAAAUAUAGCAAAUUGUUUGGCUUUUGAUUAGAUUCAGUCUGAUAAUGAUAAGGAGAUGGCCAAACAAUUA--CGCUGAUUUAACCCUGAU ..((((.(....).)))).........((((.((((.((((((((((((.((.(((((((...)))))))...........)).)))))))))))).--.))))))))......... ( -24.30, z-score = -0.96, R) >droEre2.scaffold_4820 2831151 105 + 10470090 -GAGCAAGUUCUAUAUGCAGUCUCAGCAAAUGUUGGAAAUUGUUUGACUUUUGAUUAGGUCUAGUCUGAUA---------AGAAGGCCAAACAAUUA--CGCUGAUUUAUCCAUGAA -.(((...............((.((((....))))))(((((((((.(((((.((((((.....)))))).---------)))))..))))))))).--.))).............. ( -23.30, z-score = -0.60, R) >droYak2.chr3R 2751706 93 + 28832112 ------------UAGUAAGUUCUAUAUGCA-AUCUCAAAUUGUUUGGUUUUUGAUUAGGUAAAGUCUGAUA---------AGAAGACCAAACAAUUA--CGCUGAUUAAUCCCUGAU ------------((((..((.......)).-......(((((((((((((((.((((((.....)))))).---------.))))))))))))))).--.))))............. ( -20.90, z-score = -2.37, R) >droSec1.super_0 20753554 115 - 21120651 CAGCAAAGUUCCCAUUGCCUUCUCAACAAAUAUAGCAAAUUGUUUGGCUUUUGAUUAGAUCUAGGCUGAUAACGAUAAGAAGAUGGCCAAACAAUUA--CGCUGAUUUAACCCUGAU ((((...........(((................)))(((((((((((((((..(((.(((......))).....)))..))).)))))))))))).--.))))............. ( -23.79, z-score = -1.18, R) >droSim1.chr3R 20257583 115 - 27517382 CAGCAAAGUUCUCAUUGCCUUCUCAACAAAUAUAGGAAAUUGUUUGGCUUUUGAUUAGAUCUAGUCUGAUAAUGAUAAGAAGAUGGCCAAACAAUUA--CGCUGAUUUAACCCUGAU ((((.............(((.............))).((((((((((((.((.(((((((...)))))))...........)).)))))))))))).--.))))............. ( -25.02, z-score = -1.37, R) >droGri2.scaffold_14906 4429016 95 + 14172833 -------UAGAAAACCGAUUUUACUCUGUGACUCGUUGUUGGUUUUAAUUUGAAUUGAAUUUAGUUUGA-------------ACGG--AAAUAAUUAAGAGUUGAUUUAACCCUAAU -------((((((((((((...((..........)).)))))))))...((((((..(.(((((((...-------------....--....)))))))..)..))))))..))).. ( -12.90, z-score = 0.27, R) >consensus _AGCAAAGUUCUCAUUGCCUUCUCAACAAAUAUAGCAAAUUGUUUGGCUUUUGAUUAGAUCUAGUCUGAUA_________AGAUGGCCAAACAAUUA__CGCUGAUUUAACCCUGAU .....................................((((((((((((.((.((((((.....))))))...........)).))))))))))))..................... (-11.03 = -11.45 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:04 2011