| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,417,416 – 20,417,536 |
| Length | 120 |
| Max. P | 0.726421 |
| Location | 20,417,416 – 20,417,536 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.77 |
| Shannon entropy | 0.15331 |
| G+C content | 0.32458 |
| Mean single sequence MFE | -27.72 |
| Consensus MFE | -18.14 |
| Energy contribution | -19.90 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.726421 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20417416 120 + 27905053 GUUUUGAGUUCAACUAAUCGAGCUAUGCGAAACGUCAUAGAUGUGCAGUUCUAUAAAUAGGAAAUGAAUAUUUCCUUCUAUUAAUAGGAAAUGUCACUGAAAUCUAUGAAAUGAAAACUU (((((((((((........)))))...)))))).((((((((...((((((((....)))))..(((.((((((((.........))))))))))))))..))))))))........... ( -31.00, z-score = -3.81, R) >droSim1.chr3R 20256033 120 + 27517382 GUUUUGAGUUCACUUAAUCGAGCUAUGCGAAACGUCAUAGCUGUGCAGUUCUAUAAAUAGGAAAUGAAUAUUUCCUUCUAUUAAUAGGAAAUGUCACUGAAAUCUAUGAAAUGAAAACUU (((((.(.((((........(((((((((...)).)))))))(((((.((((((.((((((((((....)))))))...))).))))))..)).))).........)))).).))))).. ( -27.60, z-score = -2.50, R) >droSec1.super_0 20752023 119 + 21120651 GUUUUGAGUUCACU-AAUCGAGCUAUGCGAAACGUCAUAGCUGUGCAGUUCUAUAAAUAGGAAAUGAAUAUUUCCUUCUAUUAAUAGGAAAUGUCACUGAAAUCUAUGAAAUGAAAACUU (((((.(.((((..-.....(((((((((...)).)))))))(((((.((((((.((((((((((....)))))))...))).))))))..)).))).........)))).).))))).. ( -27.60, z-score = -2.60, R) >droYak2.chr3R 2750165 112 - 28832112 GUUUUCAGUUCAACUCAUCGAG---UGCAGAACGUCAUAGCUGUGCAGUUCUAUAAAUAGGAAAUGAAUAUUUCCUUCUAUUAAUAGGAAAUGUCAGUGAAAUCUAU-----GAAAACUU (((((((((((.((((...)))---)...))))......((((.(((.((((((.((((((((((....)))))))...))).))))))..)))))))........)-----)))))).. ( -27.70, z-score = -2.78, R) >droEre2.scaffold_4820 2829659 112 - 10470090 GGUUUCAGUUCAACUAAUCGAG---UCCAGGACGUCAUAGCUGUGCAGUUCUAUAAAUAGGAAAUGAAUAUUUCCUUCUAUUAAUAGGAAAUGUCACUGGAAUCUAU-----GAAAACUU (((((((((........(((..---((((((((..(((....)))..))))).......)))..)))(((((((((.........))))))))).)))))))))...-----........ ( -24.71, z-score = -1.38, R) >consensus GUUUUGAGUUCAACUAAUCGAGCUAUGCGAAACGUCAUAGCUGUGCAGUUCUAUAAAUAGGAAAUGAAUAUUUCCUUCUAUUAAUAGGAAAUGUCACUGAAAUCUAUGAAAUGAAAACUU (((((((((((........)))))...)))))).((((((.....((((((((....)))))..(((.((((((((.........))))))))))))))....))))))........... (-18.14 = -19.90 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:03 2011