| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,416,002 – 20,416,082 |
| Length | 80 |
| Max. P | 0.717327 |
| Location | 20,416,002 – 20,416,082 |
|---|---|
| Length | 80 |
| Sequences | 6 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 75.82 |
| Shannon entropy | 0.45992 |
| G+C content | 0.43327 |
| Mean single sequence MFE | -21.82 |
| Consensus MFE | -11.08 |
| Energy contribution | -11.12 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.717327 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20416002 80 - 27905053 UAUGUAUGUAACUGGCGA-CGAAGCUCAUUAUCAGGGGGAAAAACCGUGGUUUUUCUGCUUUUCAGUUUCCAAAUUCUACA ......((.(((((((..-....))........(((.((((((((....)))))))).)))..)))))..))......... ( -16.90, z-score = -0.60, R) >droAna3.scaffold_13088 457892 81 - 569066 CGUGUAUUUUGCCGCCGGCCGGUUGGUACCCCAAGGGGGAUAUAAUACAGCCUCUGGGCUUACUGGCCACUGCCUGCUGCA .........(((.((.(((.(((..(((((((...)))).........((((....)))))))..)))...))).)).))) ( -30.90, z-score = -0.20, R) >droEre2.scaffold_4820 2828154 75 + 10470090 ----UAUGUAACUGGCGA-CGAAGCUCAUUAGCA-GGGGAAAAACCCUGGUUUUUCUGCUUUUCAGUUUCCAAAUUCUACA ----........(((.((-((((((.....(.((-(((......))))).)......)))))...))).)))......... ( -18.60, z-score = -1.40, R) >droYak2.chr3R 2748654 73 + 28832112 ----UAUGUAACUGGCGA-CGAAGCUCAUUAGCA---GGAAAAACCAUGGUUUUUCUGCUUUUCAGUUUCCAAAUUCUACA ----..((((...(....-)((((((.(..((((---(.((((((....)))))))))))..).)))))).......)))) ( -19.70, z-score = -2.92, R) >droSec1.super_0 20750655 79 - 21120651 UAUGUAUGAAACUGGCGA-CGAAGCUCAUUAGCA-GGGGAAAAACCGUGGUUUUUCUGCUUUUCAGUUUCCAAAUUCUACA ..((((.(((..(((.((-(((((((....)))(-(.((((((((....)))))))).)).))).))).)))..))))))) ( -22.40, z-score = -2.42, R) >droSim1.chr3R 20254630 79 - 27517382 UAUGUAUGAAACUGGCGA-CGAAGCUCAUUAGCA-GGGGAAAAACCGUGGUUUUUCUGCUUUUCAGUUUCCAAAUUCUACA ..((((.(((..(((.((-(((((((....)))(-(.((((((((....)))))))).)).))).))).)))..))))))) ( -22.40, z-score = -2.42, R) >consensus UAUGUAUGUAACUGGCGA_CGAAGCUCAUUAGCA_GGGGAAAAACCGUGGUUUUUCUGCUUUUCAGUUUCCAAAUUCUACA .........(((((.........(((....)))..(.((((((((....)))))))).)....)))))............. (-11.08 = -11.12 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:02 2011