| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,414,779 – 20,414,899 |
| Length | 120 |
| Max. P | 0.514527 |
| Location | 20,414,779 – 20,414,899 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.75 |
| Shannon entropy | 0.14606 |
| G+C content | 0.46218 |
| Mean single sequence MFE | -34.88 |
| Consensus MFE | -32.48 |
| Energy contribution | -32.28 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.514527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20414779 120 - 27905053 AUUUGAAUCGAACUGAAACCGCCUUCGAGCGAGCAAACCACUUUUGUUGCAUUUCGAAUAGCAGCGGCUGGAAUUAACAUGAGCGUAACAGUGCGCUGUUAAGCGGCUUAAGAGAGUUCU .........(((((.((.((((.(((((((.((((((.....))))))))...)))))((((((((((((..................)))).)))))))).)))).)).....))))). ( -32.67, z-score = -0.17, R) >droEre2.scaffold_4820 2826940 120 + 10470090 AUUUGAAUCGAACUGAAACCGCCUUCGAGCGAGCUAACCACUUUUGUUGCAUUUCGAGUAACAGCGGCUGGAACUAACAUGCGAGUAACAGUCCGCUGUUAGGCGGCUUAAGAGAGCUCG ....((.((...((.((.(((((((((((...((.(((.......)))))..))))))((((((((((((..(((........)))..))).)))))))))))))).)).)).))..)). ( -38.70, z-score = -1.79, R) >droYak2.chr3R 2747449 117 + 28832112 AUUUGAAUCGAACUGAAACCGACUUCGAGCGAGCAAACCACUUUUGUUGCAUUUCGAAUAGCAGUGGCUGGUAUUAACAUGC---UGUUAGUCCACUGUUAGGCGGCUUAAGAGAGUUCU .........((((((((......)))((((.((((((.....))))))......((..((((((((((((((((....))))---)...)).)))))))))..)))))).....))))). ( -31.00, z-score = -0.70, R) >droSec1.super_0 20749431 120 - 21120651 AUUUGAAUCGAACUGAAACCGCCUUCGAGCGAGCAAACCACUUUUGUUGCAAUUCGAAUAGCGGCGUCUGGAAUUAACAUGAGCGUAACAGUGCGCUGUUAGGCGGCUUAAGAGAGUUCU .........(((((.((.((((((((((((.((((((.....))))))))...)))))((((((((((((..................))).)))))))))))))).)).....))))). ( -35.67, z-score = -0.95, R) >droSim1.chr3R 20253401 120 - 27517382 AUUUGAAUCGAACUGAAACCGCCUUCGAGCGAGCAAACCACUUUUGUUGCAAUUCGAAUAGCAGCGUCUGGAAUUAACAUGAGCGUAACAGUGCGCUGUUAGGCGGCUUAAGAGAGUUCU .........(((((.((.((((((((((((.((((((.....))))))))...)))))((((((((((((..................))).)))))))))))))).)).....))))). ( -36.37, z-score = -1.38, R) >consensus AUUUGAAUCGAACUGAAACCGCCUUCGAGCGAGCAAACCACUUUUGUUGCAUUUCGAAUAGCAGCGGCUGGAAUUAACAUGAGCGUAACAGUGCGCUGUUAGGCGGCUUAAGAGAGUUCU .........(((((.((.((((((((((((.((((((.....))))))))...)))))((((((((((((..((..........))..))).)))))))))))))).)).....))))). (-32.48 = -32.28 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:01 2011