| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,414,371 – 20,414,490 |
| Length | 119 |
| Max. P | 0.686657 |
| Location | 20,414,371 – 20,414,490 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.85 |
| Shannon entropy | 0.10083 |
| G+C content | 0.39201 |
| Mean single sequence MFE | -23.22 |
| Consensus MFE | -19.50 |
| Energy contribution | -19.86 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.686657 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20414371 119 + 27905053 CAUGCGUACAUGAGCACCGGAAAAUGCCAAAAAUUUAAUGUGUCAUUCCAGCCUAAGACACAGAAUAGAAACUAAUUCGGAAAAUUUUCCUGCCUACUACAUGAACACACACCGGAAAA- ..((.((.((((.(((..(((((((.((..........((((((............))))))((((........))))))...))))))))))......)))).)).))..........- ( -23.30, z-score = -2.04, R) >droEre2.scaffold_4820 2826542 111 - 10470090 CAUGCGUACAUGAGCACCGGAAAAUGCCAAAAAUUUAAUGUGUCAUUCCGGCCAAAGACACAGAAUAGAAACUAAUUCGGAAA-UUUUCUUGCCUAC---AUGAACA----CCGGAAAA- .....((.((((.(((..(((((((.((..........((((((............))))))((((........))))))..)-)))))))))...)---))).)).----........- ( -21.50, z-score = -0.91, R) >droYak2.chr3R 2747047 112 - 28832112 CAUGCGUACAUGAGCACCGGAAAAUGCCAAAAAUUUAAUGUGUCAUUCCGGCCAAAGACACAGAAUAGAAACUAAUUCGGAAA-UUUUCUUGCCUAC---AUGAACA----CCGGAAAAA .....((.((((.(((..(((((((.((..........((((((............))))))((((........))))))..)-)))))))))...)---))).)).----......... ( -21.50, z-score = -0.90, R) >droSec1.super_0 20749019 116 + 21120651 CAUGCGUACAUGAGCACCGGAAAAUGCCAAAAAUUUAAUGUGUCAUUCCAGCUUAAGACACAGAAUAGAAACUAAUUCGGAAAAUUUUCCUGCCUAC---AUGAACACACACCGGAAAA- ..((.((.((((.(((..(((((((.((..........((((((............))))))((((........))))))...))))))))))...)---))).)).))..........- ( -25.30, z-score = -2.64, R) >droSim1.chr3R 20252985 116 + 27517382 CAUACGUACAUGAGCACCGGAAAAUGCCAAAAAUUUAAUGUGUCAUUCCAGCCUAAGACACAGAAUAGAAACUAAUUCGGAAAAUUUUCCUGCCUAC---AUGAACACACACCGGAAAA- .....((.((((.(((..(((((((.((..........((((((............))))))((((........))))))...))))))))))...)---))).)).............- ( -24.50, z-score = -2.94, R) >consensus CAUGCGUACAUGAGCACCGGAAAAUGCCAAAAAUUUAAUGUGUCAUUCCAGCCUAAGACACAGAAUAGAAACUAAUUCGGAAAAUUUUCCUGCCUAC___AUGAACACACACCGGAAAA_ ((((....)))).(((..(((((((.((..........((((((............))))))((((........))))))...))))))))))........................... (-19.50 = -19.86 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:41:00 2011