| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,552,793 – 8,552,897 |
| Length | 104 |
| Max. P | 0.705128 |
| Location | 8,552,793 – 8,552,897 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 69.06 |
| Shannon entropy | 0.54719 |
| G+C content | 0.56354 |
| Mean single sequence MFE | -37.25 |
| Consensus MFE | -13.84 |
| Energy contribution | -14.52 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.705128 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8552793 104 + 23011544 GCAGUUGGACGGUGGAGAU----GAGGU-CAACGGCGUUGACAAUCCCGCUGGCGACACGAGGUUCCUAGCCAAAGGGGAUGGAUGG--GAAUGAAUGGAUGGGGACAUCC ...((((..((((((.(((----...((-((((...)))))).))))))))).)))).....(((((((.(((.......))).)))--))))....(((((....))))) ( -41.70, z-score = -3.48, R) >droWil1.scaffold_181071 963500 106 + 1211509 GCUGUAGACGGGUUGGGGUCAAAAAGGUGCGGCUCAGUUGAUGACAACUUUGGUUGCCCUCUUCUCCCUCUUUGACCCCACGGCAUGUACAAUAAAGUGGUGUGCA----- (((((....(((((((((...((.(((.((((((.(((((....)))))..))))))))).))..))))....))))).))))).((((((.........))))))----- ( -35.40, z-score = -0.83, R) >droYak2.chr2L 11199307 106 + 22324452 GCCAUUGGACAGUGGAGAU----GAGGU-CAACGGCGUUGACAACCCCACUGGCGACUGGAGGUUUCUGUCCAAAGGGGAUGUGGGAAUGAAUGAAUGGAUGGGGACAUCC .((.((((((((.......----...((-((((...))))))(((((((..(....)))).)))).)))))))).))....................(((((....))))) ( -35.60, z-score = -1.00, R) >droSec1.super_3 4039979 103 + 7220098 GCAGUUGGACGGUGGAGAU----GAGGU-CAACGGCGUUGACAAUCCCGGUGGCGACAGGAGGUUCCUGGCCAA-GGGGUUGGACGG--GAAUGAAUGGAUGGGGACAUCC ...(((.((((.((..(((----...))-)..)).))))..(((((((..((((..((((.....)))))))).-))))))))))..--........(((((....))))) ( -40.00, z-score = -2.63, R) >droSim1.chr2L 8331655 103 + 22036055 GCAGUUGGACGGUGGAGAU----GAGGU-CAACGGCGUUGACAAUCCCGCUGGCGACAGGAGGUUUCUGGCCAA-GGGGAUGGAUGG--GAAUGAAUGGAUAGGGACAUCC ...((((..((((((.(((----...((-((((...)))))).))))))))).)))).(((.((..(((.(((.-............--.......))).)))..)).))) ( -33.55, z-score = -1.58, R) >consensus GCAGUUGGACGGUGGAGAU____GAGGU_CAACGGCGUUGACAAUCCCGCUGGCGACAGGAGGUUCCUGGCCAAAGGGGAUGGAUGG__GAAUGAAUGGAUGGGGACAUCC ...((((..((((((.(((.......((.((((...)))))).))))))))).)))).(((.(((((((.(((.......................))).))))))).))) (-13.84 = -14.52 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:17 2011