| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,413,818 – 20,413,912 |
| Length | 94 |
| Max. P | 0.595627 |
| Location | 20,413,818 – 20,413,912 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 81.96 |
| Shannon entropy | 0.27065 |
| G+C content | 0.46475 |
| Mean single sequence MFE | -23.41 |
| Consensus MFE | -12.99 |
| Energy contribution | -13.37 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.595627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20413818 94 - 27905053 CUACGAGUAAUUCCACAAUAAUCCGCACAUUUUUCC--AGGCCAGCCAUACCUGGCGCAAU-----------------UUCAUUGUUCCGCCGUUGUGCCUUUAAAUGUCCUU ........................(.((((((....--((((((((.......((((.(((-----------------......))).)))))))).))))..)))))).).. ( -18.51, z-score = -1.61, R) >droSim1.chr3R 20252447 89 - 27517382 CUACGAGUAAUUCCACAAUAAUCCGGACAUUUUUCC-------AGCCAUACCUGGCGCAAU-----------------UUCAUUGUUCCGCCGGAGUGCCUUUAAAUGUCCUU ........................((((((((....-------((.(((.((.((((.(((-----------------......))).)))))).))).))..)))))))).. ( -22.40, z-score = -2.91, R) >droSec1.super_0 20748479 92 - 21120651 CUACGAGUAAUUC--CAAUAAUCCGGACAUUUUUCC--AGGCCAGCCAUACCUGGCGCAAU-----------------UUCAUUGUUUCGCCGGAGUGCCUUUAAAUGUCCUU .............--.........((((((((....--((((.......((((((((.(((-----------------......))).)))))).))))))..)))))))).. ( -25.31, z-score = -2.78, R) >droEre2.scaffold_4820 2825979 113 + 10470090 CUACGAGUAAUUCCACAAUAAUCCGGACAUUUUUUCCGCGCCCAGCCAUACCUGCCGGAAUUUCCCUGCUCAGCAGUGUUCAGUGUUCCAGCGGAGUGCCUUUAAAUGUCCUU ........................((((((((.....((((((((......))((.(((((..(.((((...)))).)......))))).)))).))))....)))))))).. ( -27.40, z-score = -1.76, R) >consensus CUACGAGUAAUUCCACAAUAAUCCGGACAUUUUUCC__AGGCCAGCCAUACCUGGCGCAAU_________________UUCAUUGUUCCGCCGGAGUGCCUUUAAAUGUCCUU ........................((((((((...........((.(((.((.((((.(((.......................))).)))))).))).))..)))))))).. (-12.99 = -13.37 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:59 2011