| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,412,586 – 20,412,705 |
| Length | 119 |
| Max. P | 0.793696 |
| Location | 20,412,586 – 20,412,705 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.22 |
| Shannon entropy | 0.13762 |
| G+C content | 0.43843 |
| Mean single sequence MFE | -25.10 |
| Consensus MFE | -19.02 |
| Energy contribution | -19.22 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.793696 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20412586 119 + 27905053 -CAGCACUUACCGCCCACAUUCCGCUUUCGAUGACUUUCGAAAGUUAACGGAGUGCCAUUCCUUAACCAUUUUAGUUAAAAUAACUAUGUUCUUACCUUUGAAGCAUACACCGCGUGCGC -..((((..........((((((((((((((......)))))))....))))))).......(((((.......)))))......(((((((........).))))))......)))).. ( -25.90, z-score = -2.51, R) >droSim1.chr3R 20251275 119 + 27517382 -CAGCACUUACCGCCCACAUUCCGCUUUCGAUGACUUUCGAAAGUUAACGGAGUGCCAUUCCUUGCCCAUUUUAGUUAAAAUAACUAUGUUCUUACCUUUGAAGCAUCCAAGUCCUGCGC -(((.((((........((((((((((((((......)))))))....)))))))........(((......((((((...))))))..(((........))))))...)))).)))... ( -25.20, z-score = -2.36, R) >droSec1.super_0 20747317 119 + 21120651 -CAGCACUUACCGCCCACAUUCCGCUUUCGAUGACUUUCGAAAGUUAACGGAGUGCCAUUCCUUGCCCAUUUUAGUUAAAAUAACUAUGUUCUUACCUUUGAAGCAUCCAAGUCCUGCGC -(((.((((........((((((((((((((......)))))))....)))))))........(((......((((((...))))))..(((........))))))...)))).)))... ( -25.20, z-score = -2.36, R) >droYak2.chr3R 2745228 118 - 28832112 GCAGCACUUACCGCCCACAUUCCGCUUUCGAUGACUUUCGAAAGUUAACGGAGUGCCAUUCCUUGGCCAUUUUAGUUAAAAUAACUAUGUUCUUACCUUUGAACGAUACACCUUCCGC-- .......................((((((((......))))))))...(((((.((((.....)))))....((((((...))))))(((((........)))))........)))).-- ( -25.20, z-score = -2.54, R) >droEre2.scaffold_4820 2824822 118 - 10470090 CCAGCACUUACCGCCCACAUUCCGCUUUCGAUGACUUUCGAAAGUUAACGGAGUGCCAUUCCUUGCCCAUUUUAGUUAAAAUAACUAUGUUCUUACUUUUGAGGGAUACACUUACCGA-- .......................((((((((......))))))))...(((((((..(((((((........((((((...)))))).((....))....))))))).))))..))).-- ( -24.00, z-score = -1.78, R) >consensus _CAGCACUUACCGCCCACAUUCCGCUUUCGAUGACUUUCGAAAGUUAACGGAGUGCCAUUCCUUGCCCAUUUUAGUUAAAAUAACUAUGUUCUUACCUUUGAAGCAUACACCUCCUGCGC ...((............((((((((((((((......)))))))....))))))).................((((((...)))))).............................)).. (-19.02 = -19.22 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:58 2011