| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,408,250 – 20,408,333 |
| Length | 83 |
| Max. P | 0.983528 |
| Location | 20,408,250 – 20,408,333 |
|---|---|
| Length | 83 |
| Sequences | 5 |
| Columns | 88 |
| Reading direction | forward |
| Mean pairwise identity | 90.65 |
| Shannon entropy | 0.15927 |
| G+C content | 0.46438 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -18.74 |
| Energy contribution | -18.90 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.14 |
| SVM RNA-class probability | 0.983528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20408250 83 + 27905053 --CACACAC-CACUGGCGUCCCACUCGAU-ACACAUAUACAGUUGCUUACGCUUUGUUCGCUGUAACGAAAGCAGCAACAAAGCAAC- --.......-.((((..............-.........)))).......((((((((.(((((.......)))))))))))))...- ( -18.80, z-score = -1.66, R) >droEre2.scaffold_4820 2820476 88 - 10470090 CACACACACACACUAGCGUCCAACUCGCUCACACAUACUCAGUUUGUUACGCUUUGUUCGCUGUAACGAAAGCAGCAACAAAGCAAAC .......(((.(((((((.......))))...........))).)))...((((((((.(((((.......))))))))))))).... ( -21.80, z-score = -3.21, R) >droYak2.chr3R 2740875 88 - 28832112 CACACACACACACUAGCGUCCCAUUAGCUCACACAUACUCAGUUUGUUACGCUUUGUUCGCUGUAACGAAAGCAGCAACAAAGCAAAC .......(((.((((((.........)))...........))).)))...((((((((.(((((.......))))))))))))).... ( -19.60, z-score = -2.45, R) >droSec1.super_0 20743015 87 + 21120651 CACACACAUACACUGGCGUCUCACUCGCUCACACAUAUACAGUUUGUUACGCUUUGUUCGCUGUAACGAAAGCAGCAACAAAGCAAC- .....(((...(((((((.......)))...........)))).)))...((((((((.(((((.......)))))))))))))...- ( -21.10, z-score = -2.28, R) >droSim1.chr3R 20246730 87 + 27517382 CACACACAUACACUGGCGUCUCACUCGCUCACACAUAUACAGUUUGUUACGCUUUGUUCGCUGUAACGAAAGCAGCAACAAAGCAAC- .....(((...(((((((.......)))...........)))).)))...((((((((.(((((.......)))))))))))))...- ( -21.10, z-score = -2.28, R) >consensus CACACACACACACUGGCGUCCCACUCGCUCACACAUAUACAGUUUGUUACGCUUUGUUCGCUGUAACGAAAGCAGCAACAAAGCAAC_ ..............((((.......)))).....................((((((((.(((((.......))))))))))))).... (-18.74 = -18.90 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:58 2011