| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,333,279 – 20,333,376 |
| Length | 97 |
| Max. P | 0.818194 |
| Location | 20,333,279 – 20,333,376 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 87.63 |
| Shannon entropy | 0.18550 |
| G+C content | 0.54441 |
| Mean single sequence MFE | -33.08 |
| Consensus MFE | -30.08 |
| Energy contribution | -30.40 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.818194 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20333279 97 + 27905053 UGCUCCUGACCCGAGAGUCGUCUUACCAAUGCCUUUUUU----UCCGGCGGUGAGACGUGGACGCGGGUUGGAUGGGGUUGGCUGGGCAAUUUGCAUAUUG ((((((..(((((.....(((((((((...(((......----...))))))))))))......)))))..)....((....)))))))............ ( -35.10, z-score = -1.19, R) >droSim1.chr3R 20174011 96 + 27517382 UGCUCCUGACCCGAGAGUCGUCUUACCAAUGCCUUUUUU----UCCAGCGGUGAGACGUGGAUGCGGGUUGGAUGGG-UUGGCUGGGCAAUUUGCAUAUUG ((((((..(((((.....(((((((((..((........----..))..)))))))))......)))))..)...((-....)))))))............ ( -31.80, z-score = -0.76, R) >droSec1.super_0 20669129 87 + 21120651 UGCUCCUGACCCGAGAGUCGUCUUACCAAUGCCUUUUUU----UCCGGCGGUGAGACGUGGAUGCGGGUUGG----------CUGGGCAAUUUGCAUAUUG ((((((..(((((.....(((((((((...(((......----...))))))))))))......)))))..)----------..)))))............ ( -35.40, z-score = -3.04, R) >droEre2.scaffold_4820 2743999 91 - 10470090 UGCUCCUGACCCGAGAGUCGUCUUCCCGAUGCCUUUUUUCUUGUUCGGUGGUGAGACGUGGAUGCGGGUUGG----------CCGGGCAAUUUGCAUAUUG ((((((..(((((.....(((((..((...(((.............)))))..)))))......)))))..)----------..)))))............ ( -30.02, z-score = -0.76, R) >consensus UGCUCCUGACCCGAGAGUCGUCUUACCAAUGCCUUUUUU____UCCGGCGGUGAGACGUGGAUGCGGGUUGG__________CUGGGCAAUUUGCAUAUUG ((((((..(((((.....(((((((((...(((.............))))))))))))......)))))..)............)))))............ (-30.08 = -30.40 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:54 2011