| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,306,285 – 20,306,377 |
| Length | 92 |
| Max. P | 0.959751 |
| Location | 20,306,285 – 20,306,377 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 64.72 |
| Shannon entropy | 0.59200 |
| G+C content | 0.52920 |
| Mean single sequence MFE | -26.12 |
| Consensus MFE | -16.22 |
| Energy contribution | -16.92 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20306285 92 + 27905053 --GUGCGACUGG---UCAUAAAGACGACAACGUGGCGCUGCUAACAACGAACCGGAA----ACAGGAAAUGCCAAGUGGCAGUGCCAAGAUGGAGGACCAA- --.......(((---((......(((....)))((((((((((..........(...----.).((.....))...)))))))))).........))))).- ( -29.80, z-score = -2.28, R) >droWil1.scaffold_181108 314533 97 - 4707319 GAAUGGGAUUGGCAGUCAUAAAAACGACAACGUGGCGCUCCUAACAACAGACCGGAA----GCCGGAAAUGCCAAGUGGCAGUGCCAAGGCAGAG-ACUGAC ...(((((.((.(((((........)))....)).)).)))))....(((.((((..----.))))...((((...((((...)))).))))...-.))).. ( -27.60, z-score = -1.10, R) >droMoj3.scaffold_6540 20683259 85 + 34148556 ----CACGCUUCGAGUCAUAAGAGCUACAACGUGGCGUUGCUAACAACAGAGCGGAA----ACCGGAAAUGCCGAGCAGCAGUGCCAAGGCUC--------- ----........(((((......(((((...)))))((((((...........(...----.)(((.....)))))))))........)))))--------- ( -23.40, z-score = -0.04, R) >droGri2.scaffold_14906 329624 88 + 14172833 -----CUACUUGAUCUCAUAAAGAUGGCAACAUGGAGCUGCAAACAACAGACCGGAAUGAAACCGGAAAUGCCAAGUAGCAGUGCCAAGGCAA--------- -----((((((.((((.....))))((((........(((.......))).((((.......))))...))))))))))...(((....))).--------- ( -22.00, z-score = -1.34, R) >droVir3.scaffold_13047 3673290 77 + 19223366 -----CCACUUCUGCUCAUAAAAGCUACAACGUGGCGCUGCUGCUG-----GCGCAG----AGCGAAAA--CCAAGCAGCAGUGCAAAGGCUC--------- -----.(((....(((......)))......)))((((((((((((-----((((..----.)))....--)).)))))))))))........--------- ( -27.80, z-score = -1.24, R) >consensus _____CCACUUG_ACUCAUAAAAACGACAACGUGGCGCUGCUAACAACAGACCGGAA____ACCGGAAAUGCCAAGUAGCAGUGCCAAGGCAC_________ ..............................(.(((((((((((....((..((((.......))))...)).....))))))))))).)............. (-16.22 = -16.92 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:51 2011