| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,304,383 – 20,304,487 |
| Length | 104 |
| Max. P | 0.629403 |
| Location | 20,304,383 – 20,304,487 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 73.82 |
| Shannon entropy | 0.43230 |
| G+C content | 0.46177 |
| Mean single sequence MFE | -33.30 |
| Consensus MFE | -15.36 |
| Energy contribution | -16.24 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629403 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20304383 104 - 27905053 AUUGUUUGCCCUCGGUGUGCAUUGGUGCUUUGUGAAUGUGCGGCCGUACUAUAGCUGUGUAGCUAUAUAACCAUAUAGCUAUUUGCUGUCGCUGCAUCUGUGUA .......(((...))).(((((.(((((...((((..((((....))))..((((...((((((((((....))))))))))..)))))))).))))).))))) ( -33.80, z-score = -1.73, R) >droSim1.chr3R 20145204 101 - 27517382 AUUGUUUGCCCUCGGUGUGCAGUGGUGCUUUGUGGAUGUGCGGCAG---UAUAGCAGUGUAGCUAUAUAGCCAUAUAGCUAUUUGCUGUCGCUGCAUCUGUGUG (((((.((((...)))).)))))........(..((((((((((((---((((((.((((.(((....))).)))).)))))..)))))))).)))))..)... ( -36.70, z-score = -1.20, R) >droSec1.super_0 20640511 101 - 21120651 AUUGUUUGCCCUCGGUGUGCAGUGGUGCUUUGUGGAUGUGUGGCUG---UAUAGCAGUGUAGCUAUAUAGCCAUAUAGCUAUUUGCUGUCGCUGCAUCUGUGUG ..........(.(((.((((((((..((...((((.((((((((((---((((((......)))))))))))))))).))))..))...))))))))))).).. ( -44.40, z-score = -4.50, R) >dp4.chr2 12304604 87 + 30794189 AUUGUUUGCCGUCGGUGUACG--AGUAC----------UGCGGCUCCGAUGUAGC----UACAUAUAUAGCCAUAUAGC-GCUAGCUAUGUCUAUAUCUCUCUA .......((((.(((((....--..)))----------))))))...(((((((.----.(((((..(((((.....).-))))..))))))))))))...... ( -25.80, z-score = -1.09, R) >droPer1.super_3 6162693 87 + 7375914 AUUGUUUGCCGUCGGUGUACG--AGUAC----------UGCGGCUCCGAUGUAGC----UACAUAUAUAGCCAUAUAGC-GCUAGCUAUGUCUAUAUCUCUCUA .......((((.(((((....--..)))----------))))))...(((((((.----.(((((..(((((.....).-))))..))))))))))))...... ( -25.80, z-score = -1.09, R) >consensus AUUGUUUGCCCUCGGUGUGCA_UGGUGCUUUGUG_AUGUGCGGCUG___UAUAGC_GUGUAGCUAUAUAGCCAUAUAGCUAUUUGCUGUCGCUGCAUCUGUGUA ..(((.((((...)))).))).................((((((......(((((...((((((((((....))))))))))..))))).))))))........ (-15.36 = -16.24 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:50 2011