| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,298,245 – 20,298,339 |
| Length | 94 |
| Max. P | 0.582298 |
| Location | 20,298,245 – 20,298,339 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 71.97 |
| Shannon entropy | 0.56801 |
| G+C content | 0.39423 |
| Mean single sequence MFE | -15.73 |
| Consensus MFE | -8.79 |
| Energy contribution | -8.85 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.76 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20298245 94 + 27905053 ------CUUACCCAUAGGCAUAGAC----CCCCCCCCCUUAGAAUGUAUCUCUUUAUUUGCACAGCAUUUACAUGAUGUGCUUGCGGAUUUUAUUUAUUUAUCU ------.....((.(((((......----...............((((..........))))..(((((.....)))))))))).))................. ( -11.00, z-score = 0.56, R) >droSim1.chr3R 20139010 80 + 27517382 ------------------------CUUACCCACACCCCAGCGAAUGUAUCUCUUUAUUUGCACAGCAUUUACAUGAUGUGCUUGCGGAUUUUAUUUAUUUAUUU ------------------------............((.(((((((........)))))))...(((..(((.....)))..)))))................. ( -14.00, z-score = -2.09, R) >droSec1.super_0 20634407 80 + 21120651 ------------------------CUUACCCAUACCCCACGGAAUGUAUCUCUUUAUUUGCACAGCAUUUACAUGAUGUGCUUGCGGAUUUUAUUUAUUUAUUU ------------------------......(((.((....)).))).........(((((((.(((((.........))))))))))))............... ( -11.70, z-score = -1.03, R) >droYak2.chr3R 2628274 104 - 28832112 UAUAGCCAUAGCCAUAGCCAUAGUCAUUUCCCUACUCCGCCAAAUGUAUCUCUUUAUUUGCACAGUAUUUACAUGAUGUGCUUGCGGAUUUUAUUUAUUUAUUU (((.((....)).)))...................(((((.(((((........)))))(((((.(((....))).)))))..)))))................ ( -14.10, z-score = 0.05, R) >droEre2.scaffold_4820 2708913 98 - 10470090 ------UAUAGCCAUCGCCAUAGCCAUUCCCCAACAUCGCCGAAUGUAUCUCUUUAUUUGCACAGUAUUUACAUGAUGUGCUUGCGGAUUUUAUUUAUUUAUUU ------........((((......(((((..(......)..))))).............(((((.(((....))).)))))..))))................. ( -12.20, z-score = 0.49, R) >droAna3.scaffold_13088 339314 90 + 569066 --------------CCCACCCCUAGCCCCUAGCCCCUAGCAGGAUGUAUCUUUUUAUUUGCACAGCAUUUACAUGAUGUGCUUGCGGAUUUUAUUUAUUUAUUU --------------.............(((.((.....)))))............(((((((.(((((.........))))))))))))............... ( -14.00, z-score = -0.38, R) >dp4.chr2 12297351 104 - 30794189 CCUGGCCCUGCCGCUGCCCCGCCACUCACCAUUCGCCAACCGAAAGUAUCUUUUUAUUUGCACAGCAUUUACAUGAUGUGCUGGCGGAUUUUAUUUAUUUAUUU ..((((...((....))...))))......((((((((..(....).............(((((.(((....))).)))))))))))))............... ( -24.40, z-score = -1.86, R) >droPer1.super_3 6155469 104 - 7375914 CCUGGCCCUGCCGCUGCCCCGCCACUCACCAUUCGCCAACCGAAAGUAUCUUUUUAUUUGCACAGCAUUUACAUGAUGUGCUGGCGGAUUUUAUUUAUUUAUUU ..((((...((....))...))))......((((((((..(....).............(((((.(((....))).)))))))))))))............... ( -24.40, z-score = -1.86, R) >consensus ______C_U__C__U_CCCAUAGACUUACCCCUACCCCACCGAAUGUAUCUCUUUAUUUGCACAGCAUUUACAUGAUGUGCUUGCGGAUUUUAUUUAUUUAUUU .......................................................(((((((.(((((.........))))))))))))............... ( -8.79 = -8.85 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:48 2011