| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,297,484 – 20,297,537 |
| Length | 53 |
| Max. P | 0.933664 |
| Location | 20,297,484 – 20,297,537 |
|---|---|
| Length | 53 |
| Sequences | 6 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 74.20 |
| Shannon entropy | 0.48771 |
| G+C content | 0.36947 |
| Mean single sequence MFE | -12.18 |
| Consensus MFE | -4.55 |
| Energy contribution | -5.88 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.933664 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20297484 53 + 27905053 --GCUUAUCCCUUUUUAUGGCCUUUAAUGCUACGAAUUAGGAUUGGCAUGAACUU- --(((.((((...((..((((.......))))..))...)))).)))........- ( -12.90, z-score = -2.47, R) >droSim1.chr3R 20138247 53 + 27517382 --GCUCAUCCUUUUUUAUGGCUUUUAAUGCUACGAAUUAGGAUUGGCAUGAACUU- --(((.(((((..((..((((.......))))..))..))))).)))........- ( -17.40, z-score = -4.91, R) >droSec1.super_0 20633650 53 + 21120651 --GCUUAUCCUUUUUCAUGGCCUUUAAUGCUACGAAUUAGGAUUUGCAUGAACUU- --((..(((((..(((.((((.......)))).)))..)))))..))........- ( -16.50, z-score = -4.76, R) >droYak2.chr3R 2627459 52 - 28832112 --GCUU-CACUUUUUUAUGGCCUUUAAUGCUACGAAUUAGGAUUGGCAUGAACUU- --(((.-..((..((..((((.......))))..))..))....)))........- ( -9.50, z-score = -1.59, R) >droEre2.scaffold_4820 2708179 52 - 10470090 --GCCCAGCCCUUUU-AUAGCCUUUAAUGCUACGAAUUAGGACUGGCAUGAACUU- --(((.((.(((((.-.((((.......))))..))..))).)))))........- ( -12.90, z-score = -2.29, R) >droAna3.scaffold_13088 338345 54 + 569066 AUAUAUUCUCUUUUUACCAGACAAAGAUGC--CCAAUGAAGUUUGAAAAAAGCCUU .........((((((..(((((........--........))))).)))))).... ( -3.89, z-score = 0.11, R) >consensus __GCUUAUCCUUUUUUAUGGCCUUUAAUGCUACGAAUUAGGAUUGGCAUGAACUU_ ..(((...(((..(((.((((.......)))).)))..)))...)))......... ( -4.55 = -5.88 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:48 2011