| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,267,463 – 20,267,541 |
| Length | 78 |
| Max. P | 0.724440 |
| Location | 20,267,463 – 20,267,541 |
|---|---|
| Length | 78 |
| Sequences | 10 |
| Columns | 89 |
| Reading direction | forward |
| Mean pairwise identity | 84.76 |
| Shannon entropy | 0.33469 |
| G+C content | 0.34898 |
| Mean single sequence MFE | -16.75 |
| Consensus MFE | -10.85 |
| Energy contribution | -11.77 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20267463 78 + 27905053 CUUCUUCAAAUGACAAGUUAAUCAUUUAUUAACGUUGACAUGUCAUUGCU-CAAGUAUUUAUUUACUGC----------GGCAACUACA ........(((((((.((((((...........)))))).)))))))(((-..((((......))))..----------)))....... ( -16.30, z-score = -2.91, R) >droSim1.chr3R 20108277 83 + 27517382 ---CUUCAAAUGACAAGUUAAUCAUUUAUUAACGUUGACAUGUCAUUGCU-CAAGUAUUUAUUUACUGCCUGGCU--GCGGCAACUACA ---.....(((((((.((((((...........)))))).)))))))...-..((((......))))(((.....--..)))....... ( -16.20, z-score = -1.17, R) >droSec1.super_0 20604166 83 + 21120651 ---CUUCAAAUGACAAGUUAAUCAUUUAUUAACGUUGACAUGUCAUUGCU-CAAGUAUUUAUUUACUGCCUGGCU--GCGGCAACUACA ---.....(((((((.((((((...........)))))).)))))))...-..((((......))))(((.....--..)))....... ( -16.20, z-score = -1.17, R) >droYak2.chr3R 2595796 83 - 28832112 ---CUUCAAAUGACAAGUUAAUCAUUUAUUAACGUUGACAUGUCAUUGCU-CAAGUAUUUAUUUACUGCCUGGCU--GCGGCAGCUACA ---.....(((((((.((((((...........)))))).)))))))(((-..((((......))))(((.....--..)))))).... ( -18.20, z-score = -1.33, R) >droEre2.scaffold_4820 2678231 83 - 10470090 ---CUCCAAAUGACAAGUUAAUCAUUUAUUAACGUUGACAUGUCAUUGCU-CAAGUAUUUAUUUACUGCCUGGCU--GCGGCAACUACA ---..((.(((((((.((((((...........)))))).)))))))(((-..((((......))))....))).--..))........ ( -16.40, z-score = -1.21, R) >droAna3.scaffold_13088 308512 83 + 569066 ---CUUCAAAUGACAAGUUAAUCAUUUAUUAACGUUGACAUGUCAUUGCU-CAAGUAUUUAUUUACUGCCUGGAU--GAAGCAACUACA ---((((((((((((.((((((...........)))))).)))))))...-..((((......)))).......)--))))........ ( -16.20, z-score = -1.53, R) >dp4.chr2 12259136 83 - 30794189 ---CUUCAAAUGACAAGUUAAUCAUUUAUUAACGUUGACAUGUCAUUGCU-CAAGUAUUUAUUUACUGCCUGGCU--GUGGCAACUACU ---.....(((((((.((((((...........)))))).)))))))...-..((((......))))(((.....--..)))....... ( -16.80, z-score = -1.46, R) >droPer1.super_3 6109263 83 - 7375914 ---CUUCAAAUGACAAGUUAAUCAUUUAUUAACGUUGACAUGUCAUUGCU-CAAGUAUUUAUUUACUGCCUGCCU--GUGGCAACUACC ---.....(((((((.((((((...........)))))).)))))))...-..((((......))))(((.....--..)))....... ( -16.80, z-score = -1.87, R) >droWil1.scaffold_181108 275423 85 - 4707319 ---AUCCAAAUGACAAGUUAAUCAUUUAUUUACGUUGACAUGUCAUUGCU-CAAGUAUUUAUUUACCUCUUGGCUCAGCGGCAAUGGCA ---..((((((((((.((((((...........)))))).)))))))((.-((((.............))))))..........))).. ( -16.32, z-score = -0.85, R) >droMoj3.scaffold_6540 13512349 67 - 34148556 CCACUUGAAAUGACAAGUUAAUCAUUAAUUUUGGCUGACAUGUCACAAUUUCAAGUAUUCAAUUUCA---------------------- ..(((((((((((((.((((..((.......))..)))).)))))...))))))))...........---------------------- ( -18.10, z-score = -4.16, R) >consensus ___CUUCAAAUGACAAGUUAAUCAUUUAUUAACGUUGACAUGUCAUUGCU_CAAGUAUUUAUUUACUGCCUGGCU__GCGGCAACUACA ........(((((((.((((((...........)))))).))))))).......(((......)))((((.........))))...... (-10.85 = -11.77 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:35 2011