| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,496,446 – 8,496,537 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 8,496,446 – 8,496,537 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 83.82 |
| Shannon entropy | 0.26568 |
| G+C content | 0.42393 |
| Mean single sequence MFE | -20.60 |
| Consensus MFE | -16.38 |
| Energy contribution | -18.25 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 8496446 91 - 23011544 GUCCAGCUGCGUAUUGGAAUUU-AGGAUUCACUUCUUGAGAA---CGCUAUCGAAAAGA---UCGAAAUAUCACCUCACACCUGAAAUGAUAAUAUGC ........((((((((...(((-(((.((((.....))))..---.....((((.....---))))..............))))))....)))))))) ( -15.90, z-score = -0.28, R) >droEre2.scaffold_4929 9089902 98 - 26641161 GUCUAGCUGCGUACUCGAAUUUCAGGACUCCAUUCUUGAGAAAAGCGCUAUCGAGAAGAUAGCCAAAUUAUCACCUCACACCUGAAAAGAUAGUAAGC ........((.((((....(((((((.(((.......)))....(.((((((.....)))))))................)))))))....)))).)) ( -22.20, z-score = -1.36, R) >droYak2.chr2L 11141536 98 - 22324452 GUCCAGCUGCCUAAUCGAAUUUCAGGAUUCACUUCUUGAGAACAGCGCUAUCGAGAAGAUAGCCCAAAUAUCACCGCACACCUGAAUUGAUAGUGUGC .....((((.(.....)..((((((((......)))))))).))))((((((.....))))))............((((((...........)))))) ( -25.50, z-score = -2.18, R) >droSec1.super_3 3983138 97 - 7220098 GUCCACCUGCGUAUUUAAAUUU-AGGAUUCACUUCUUGAGAACAGCGCUAUCGAGCAGAUAGUCCACAUAUCACCUCACACCUGAAAUGAUAAUAUGC ........((((((.....(((-((((......)))))))....(.((((((.....)))))).)...(((((..(((....)))..))))))))))) ( -18.80, z-score = -1.32, R) >consensus GUCCAGCUGCGUAUUCGAAUUU_AGGAUUCACUUCUUGAGAACAGCGCUAUCGAGAAGAUAGCCCAAAUAUCACCUCACACCUGAAAUGAUAAUAUGC ........(((((((...((((((((.((((.....))))......((((((.....)))))).................))))))))...))))))) (-16.38 = -18.25 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:14 2011