| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,249,056 – 20,249,157 |
| Length | 101 |
| Max. P | 0.820327 |
| Location | 20,249,056 – 20,249,157 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 82.60 |
| Shannon entropy | 0.35479 |
| G+C content | 0.36997 |
| Mean single sequence MFE | -27.27 |
| Consensus MFE | -10.95 |
| Energy contribution | -11.47 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.820327 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20249056 101 - 27905053 -----------GGAAAUGAAAAUGAAAUAAUCUGCCAACUAAGAGGCGCAUAAAUAGCCCUCGAAAUGACAUUCAUUUUCGUUGUC--GUUGUUUAUGCCUGCC--AUUUUCGUUG -----------...((((((((((.........(((........)))(((((((((((...(((((((.....)).))))).....--)))))))))))....)--))))))))). ( -29.80, z-score = -4.04, R) >droSim1.chr3R 20086164 101 - 27517382 -----------GGAAAUGAAAAUGAAAUAAUCUGCCAACUAAGAGGCGCAUAAAUAGCCCUCGAAAUGACAUUCAUUUUCGUUGGC--GUUGUUUAUGCCUGCC--AUUUUCGUUG -----------...((((((((((.........(((........)))(((((((((((((.(((((((.....)).)))))..)).--)))))))))))....)--))))))))). ( -34.00, z-score = -4.77, R) >droYak2.chr3R 2576729 103 + 28832112 -----------GGAAAUGAAAAUGAAAUAAUCUGCCAACUAAGAGGCGCAUAAAUAGCCCUCGAAAUGACAUUCAUUUUCGUUGUUCGCUUGUUUAUGCCAGCC--AUUUUCGUUG -----------...((((((((((.........(((........)))(((((((((((...(((((((.....)).)))))......)).)))))))))....)--))))))))). ( -27.80, z-score = -2.95, R) >droEre2.scaffold_4820 2659284 101 + 10470090 -----------GGAAAUGAAAAUGAAAUAAUCUGCCAACUAAGAGGCGCAUAAAUAGCCCUCGAAAUGACAUUCAUUUUCGUUGUC--GUUGUUUAUGCCAGCC--AUUUUCGUUG -----------...((((((((((.........(((........)))(((((((((((...(((((((.....)).))))).....--)))))))))))....)--))))))))). ( -29.80, z-score = -3.93, R) >droSec1.super_0 20585910 101 - 21120651 -----------GGAAAUGAAAAUGAAAUAAGCUGCAAACUAAGAGGCGCAUAAAUAGCCCUCGAAAUGACAUUCAUUUUCGUUGGC--GUUGUUUAUGCCUGCC--AUUUUCGUUG -----------...((((((((((......(((.(.......).)))(((((((((((((.(((((((.....)).)))))..)).--)))))))))))....)--))))))))). ( -31.60, z-score = -3.63, R) >droAna3.scaffold_13088 288977 101 - 569066 -----------GGAAAUGAAAAUGAAAUAAUCUGCCAACUAAGAGGCGCAUAAAUAGCCCUCGAAAUGACAUUCAUUUUCGUUGUC--GUUCUUUAUGUCGGCC--AUUUUCGUUG -----------...((((((((((.........(((.((...((((.((.......))))))(((.(((((...........))))--)))).....)).))))--))))))))). ( -25.30, z-score = -2.27, R) >dp4.chr2 12239727 103 + 30794189 -----------GGAAAUG-AAAUGAAAUAAUCUGCCAACUAAGAGGCGCAUAAAUAGCCCUCGAAAUGACAUUCAUUUUGGAUGUC-GUUUGCUUAUGUUGGGCAUAUUUUCGUUA -----------.......-.(((((((.....(((((((...((((.((.......)))))).(((((((((((.....)))))))-))))......))).))))...))))))). ( -31.40, z-score = -3.48, R) >droPer1.super_3 6089768 103 + 7375914 -----------GGAAAUG-AAAUGAAAUAAUCUGCCAACUAAGAGGCGCAUAAAUAGCCCUCGAAAUGACAUUCAUUUUGGAUGUC-GUUUGCUUAUGUUGGGCAUAUUUUCGUUA -----------.......-.(((((((.....(((((((...((((.((.......)))))).(((((((((((.....)))))))-))))......))).))))...))))))). ( -31.40, z-score = -3.48, R) >droWil1.scaffold_181108 253010 107 + 4707319 AAAUACAUAUGGGAAAUGAAAAUGAAAUAAUCUGCCAACUAAAAGGCGAAUAAAUAGCAGUCGAAUUGACAUUCAUUUUCG--------UUGUUUAUGGGCGAC-CAUUUUUAUAG .......(((((((((((((((((((......((((........))))...........(((.....))).))))))))))--------))....((((....)-)))))))))). ( -25.00, z-score = -2.76, R) >droMoj3.scaffold_6540 20612294 103 - 34148556 -----------GAGAAUGAAAAUGAAAUAAUCUGCCAACUAAAAGGCGCAUAAAUAGCUGUCG-AAUGACAUUCAUUUUCUUUUGU-UCAUCUUUAUAGCAGCCAUUUUGCUGUCG -----------..(((((((((((((.......(((........)))((.......))((((.-...)))))))))))))....))-)).........(((((......))))).. ( -22.30, z-score = -1.43, R) >droVir3.scaffold_13047 3601979 103 - 19223366 -----------GGGAAUGGAAAUGAAAUAAUCUGCCAACUAAAAGGCGCAUAAAUAGCUGUCG-AAUGACAUUCAUUUUCUGUUGU-UCUUCUUUAUGGCAACCAUUUUGUUGUCG -----------(((((((((((((((.......(((........)))((.......))((((.-...)))))))))))))....))-))))......((((((......)))))). ( -23.00, z-score = -1.33, R) >droGri2.scaffold_14906 261184 101 - 14172833 -----------GGGAAUGAAAAUGAAAUAAUCUGCCAACUAAAAGUCGCAUAAAUAGCUGUCG-AAUGACAUUCAUUUUCAGUUGU-UCUUCUUUAUAUAUGCCAUUUUG-UGUC- -----------.((...((...........))..)).....(((((.(((((((((((((..(-((((.....))))).)))))))-)..........))))).))))).-....- ( -15.80, z-score = 0.08, R) >consensus ___________GGAAAUGAAAAUGAAAUAAUCUGCCAACUAAGAGGCGCAUAAAUAGCCCUCGAAAUGACAUUCAUUUUCGUUGUC__GUUGUUUAUGCCAGCC__AUUUUCGUUG .................(((((((((.......(((........)))((.......)).............))))))))).................................... (-10.95 = -11.47 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:31 2011