| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,221,911 – 20,222,026 |
| Length | 115 |
| Max. P | 0.582301 |
| Location | 20,221,911 – 20,222,026 |
|---|---|
| Length | 115 |
| Sequences | 11 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 86.37 |
| Shannon entropy | 0.27923 |
| G+C content | 0.33094 |
| Mean single sequence MFE | -19.36 |
| Consensus MFE | -17.09 |
| Energy contribution | -17.45 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582301 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20221911 115 + 27905053 UUGCUACAAAAGACGACCUUUGAUUGGAAGACAUACGAUUUUAUGUUUUUUGAAUCUCAGGGUCAAGCCGCAUAUUUAU--CAAAUACCU-CAAUUUCCUGUUU-ACAUCGUAAUUAAU .(((..(....)..((((((.(((..(((((((((......)))))))))..).))..)))))).....))).......--.........-.............-.............. ( -18.50, z-score = -0.36, R) >droSim1.chr3R 20060067 115 + 27517382 UUGCUACAAAAGACGACCUUUGAUUGGAAGACAUACGAUUUUAUGUUUUUUGAAUCUCAGGGUCAAGCCGCAUAUUUAU--CAAAUACCU-CAAUUUCCUGUUU-ACAUCGUAAUUAUU .(((..(....)..((((((.(((..(((((((((......)))))))))..).))..)))))).....))).......--.........-.............-.............. ( -18.50, z-score = -0.37, R) >droSec1.super_0 20560541 115 + 21120651 UUGCUACAAAAGACGACCUUUGAUUGGAAGACAUACGAUUUUAUGUUUUUUGAAUCUCAGGGUCAAGCCGCAUAUUUAU--CAAAUACCU-CAAUUUCCUGUUU-ACAUCGUAAUUAUU .(((..(....)..((((((.(((..(((((((((......)))))))))..).))..)))))).....))).......--.........-.............-.............. ( -18.50, z-score = -0.37, R) >droYak2.chr3R 2549454 116 - 28832112 UUGCUACAAAAGACGACCUUUGAUUGGAAGACAUACGAUUUUAUGUUUUUUGAAUCUCAGGGUCAAGCCGCAUAUUUAU--CAAAUACCU-CAAUUUCCUGUUUUACAUCGUAAUUAUU ((((.....(((((((((((.(((..(((((((((......)))))))))..).))..))))))........((((...--..))))...-.........))))).....))))..... ( -20.00, z-score = -0.87, R) >droEre2.scaffold_4820 2632137 115 - 10470090 UUGCUACAAAAGACGACCUUUGAUUGGAAGACAUACGAUUUUAUGUUUUUUGAAUCUCAGGGUCAAGCCGCAUAUUUAU--CAAAUACCU-CAAUUUCCUGUUU-ACAUCGUAAUUAUU .(((..(....)..((((((.(((..(((((((((......)))))))))..).))..)))))).....))).......--.........-.............-.............. ( -18.50, z-score = -0.37, R) >droAna3.scaffold_13088 262930 116 + 569066 UUGCUACAAAAGACGACCUUUGAUUGGAAGACAUACGAUUUUAUGUUUUUUGAAUCUCAGGGUCAAGCCGCAUAUUUAU--CAAAUACUUUCAAUUUUCUGUUU-ACAUCAUAAUUAUU .(((..(....)..((((((.(((..(((((((((......)))))))))..).))..)))))).....))).......--.......................-.............. ( -18.50, z-score = -0.74, R) >dp4.chr2 12212968 115 - 30794189 UUGCUACAAAAGACGACCUUUGAUUGGAAGACAUACGAUUUUAUGUUUUUUGAAUCUCAGGGUCAAGCCGCAUAUAUAU--CAAAUACGU-CAAUUUCUUGAUU-ACACCAUAAGUUUU .........(((((((((((.(((..(((((((((......)))))))))..).))..))))))...............--.......((-(((....))))).-.........))))) ( -21.80, z-score = -1.38, R) >droPer1.super_3 6063107 115 - 7375914 UUGCUACAAAAGACGACCUUUGAUUGGAAGACAUACGAUUUUAUGUUUUUUGAAUCUCAGGGUCAAGCCGCAUAUAUAU--CAAAUACGU-CAAUUUCUUGAUU-ACACCAUAAGUUUU .........(((((((((((.(((..(((((((((......)))))))))..).))..))))))...............--.......((-(((....))))).-.........))))) ( -21.80, z-score = -1.38, R) >droWil1.scaffold_181108 223921 99 - 4707319 UUGCUACAAAAGACGACCUUUGAUUGGAAGACAUACGAUUUUAUGUUUUUUGAAUCUCAGGGUCAAGCCGCAUAUAUAU--CAGAUUACU-UAGUUUUUCAG----------------- ........((((((((((((.(((..(((((((((......)))))))))..).))..))))))...............--.((....))-..))))))...----------------- ( -18.90, z-score = -1.21, R) >droVir3.scaffold_13047 3567563 93 + 19223366 UUGCUACAAAAGACGACCUUUGAUUGGAAGACAUCCGAUUUUAUGUUUUU-GAAUCUCAGGGUCAAGCCGCAUAUAUAUAUCAAAU-ACU-UAUUU----------------------- .(((..(....)..((((((.((((.((((((((........))))))))-.))))..)))))).....)))..............-...-.....----------------------- ( -19.00, z-score = -1.85, R) >droGri2.scaffold_14906 230147 91 + 14172833 UUGCUACAAAAGACGACCUUUGAUUGGAAGACAUCCGAUUUUAUGUUUUU-GAAUCUCAGGGUCAAGCCGCAUAUAUAU--CAAAU-ACU-UAGUU----------------------- .(((..(....)..((((((.((((.((((((((........))))))))-.))))..)))))).....))).......--.....-...-.....----------------------- ( -19.00, z-score = -1.62, R) >consensus UUGCUACAAAAGACGACCUUUGAUUGGAAGACAUACGAUUUUAUGUUUUUUGAAUCUCAGGGUCAAGCCGCAUAUUUAU__CAAAUACCU_CAAUUUCCUGUUU_ACAUCGUAAUUAUU .(((..(....)..((((((.((((((((((((((......)))))))))).))))..)))))).....)))............................................... (-17.09 = -17.45 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:23 2011