| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,490,609 – 8,490,719 |
| Length | 110 |
| Max. P | 0.930001 |
| Location | 8,490,609 – 8,490,719 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 124 |
| Reading direction | reverse |
| Mean pairwise identity | 72.45 |
| Shannon entropy | 0.49625 |
| G+C content | 0.36120 |
| Mean single sequence MFE | -27.38 |
| Consensus MFE | -12.31 |
| Energy contribution | -14.52 |
| Covariance contribution | 2.20 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.930001 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8490609 110 - 23011544 UCGGUUUCGCAGGUAAACAAA-GCUUGGUGAACUGGCCCCAAUAAAGAUAAAUACUUAUCAUUCUUAUUUAUUGUUCUUGUGAAAUCUUAGCAGCCUAUA-UUUGUUGUUAC------------ ..(((((((((((..(((((.-(((.((....))))).........(((((....)))))...........)))))))))))))))).(((((((.....-...))))))).------------ ( -25.90, z-score = -2.19, R) >droAna3.scaffold_12916 10135577 123 - 16180835 UCGAUUGCCCGAGCAUUCAAAUAAUUGAACCUCCGGGCACCAUAAAAGCCGGAACGUUUGAUACACACCUG-UGUUUGUGUUAAUGAUUAUUGAAUUUCAUGCAGUGGAUACAAACUCAGACAA ..((.(((....))).)).....((..(((.(((((............)))))..)))..))......(((-.(((((((((..((.....((.....))..))...))))))))).))).... ( -29.30, z-score = -1.17, R) >droEre2.scaffold_4929 9084045 110 - 26641161 UAGCUUUUGCAGGUAAACAAA-GGUUGGGGCUCUUGCCCCAAUAAAGAUAAAGCCUUAUCAUUCUUAUACAUUGUUCUUUUGAAAUCUUAGCAGCCAAAA-UUUGGUGAUAC------------ ..(((....((((..(((((.-(((((((((....))))))))...(((((....))))).........).)))))..)))).......))).((((...-..)))).....------------ ( -28.90, z-score = -1.96, R) >droYak2.chr2L 11135556 111 - 22324452 UAGCUUUUGCAGGUAAACAAA-GGUUGGUGCUCUUGCUCCAAUAAAGAUAAACACUUAUCAUUCUUAGACAUUGUUCUUUUAAAAUCUUAACAGCCAAUAUUUUGUUGUGAC------------ ..((....))(((..(((((.-((((((.((....)).)))))...(((((....))))).........).)))))..)))....((.((((((........)))))).)).------------ ( -18.20, z-score = 0.25, R) >droSec1.super_3 3977429 110 - 7220098 UCGGUUUCGCAGGUAAACAAA-GGUUGGCGCACUUGCCCCAAUAAAGAUAAAUACUUAUCAUUCUUAUUCAUUGUUCUUGUGAAAUCUUAGCAGCCAAUA-UUUGUUGUUAC------------ ..(((((((((((..(((((.-.(((((.((....)).)))))...(((((....)))))...........)))))))))))))))).(((((((.....-...))))))).------------ ( -31.00, z-score = -3.99, R) >droSim1.chr2L 8268134 110 - 22036055 UCGGUUUCGCAGGUUAACAAA-GGUUGGCGCACUUGCCCCAAUAAAGAUAAAUACUUAUCAUUCUUAUUCAUUGUUCUUGUGAAAUCUUAGCAGCCAAUA-UUUGUUGUUAC------------ ..(((((((((((..(((((.-.(((((.((....)).)))))...(((((....)))))...........)))))))))))))))).(((((((.....-...))))))).------------ ( -31.00, z-score = -4.00, R) >consensus UCGGUUUCGCAGGUAAACAAA_GGUUGGCGCACUUGCCCCAAUAAAGAUAAAUACUUAUCAUUCUUAUUCAUUGUUCUUGUGAAAUCUUAGCAGCCAAUA_UUUGUUGUUAC____________ ....(((((((((..(((((...(((((.((....)).)))))...(((((....)))))...........))))))))))))))...(((((((.........)))))))............. (-12.31 = -14.52 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:13 2011