Locus 11298

Sequence ID dm3.chr3R
Location 20,127,632 – 20,127,732
Length 100
Max. P 0.860431
window15528

overview

Window 8

Location 20,127,632 – 20,127,732
Length 100
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 94.19
Shannon entropy 0.10027
G+C content 0.44889
Mean single sequence MFE -26.50
Consensus MFE -24.68
Energy contribution -24.76
Covariance contribution 0.08
Combinations/Pair 1.08
Mean z-score -1.66
Structure conservation index 0.93
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.95
SVM RNA-class probability 0.860431
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 20127632 100 + 27905053
CGCAUAUGCUGACGCUGAUUAGUCAUACCAACAGAAUGCAGUGUAAAAUCCGAAAUGCAAAAUGCA--------CUGGCAGAGCCAGAGGUAAAACCAAAGCAAAGCG
(((...(((((((........))).((((.......((((.((((..........))))...))))--------(((((...))))).)))).......))))..))) ( -26.10, z-score =  -2.11, R)
>droYak2.chr3R 2453967 108 - 28832112
UGCAUAUGCUGACGCUGAUUAGUCACACCAACAGAAUGCAGUGCAAAAUCCGAAAUGCAAAAUGCAAAAUGCAACUGGCAGAGCUUGAGGUAAAACCGAAGCAAAGCG
(((((.((.((((........)))))).........((((.((((..........))))...))))..)))))....((...((((..((.....)).))))...)). ( -24.20, z-score =  -0.02, R)
>droEre2.scaffold_4820 2536855 100 - 10470090
UGCAUAUGCUGACGCUGAUUAGUCAUACCAACAGAAUGCAGUGCAAAAUCCGAAAUGCAAAAUGCA--------CUGGCAGAGCCAGAGGUAAAACCAAAGCAAAGCG
.((...(((((((........))).((((.......((((.((((..........))))...))))--------(((((...))))).)))).......))))..)). ( -27.40, z-score =  -2.19, R)
>droSec1.super_0 20461891 100 + 21120651
UGCAUAUGCUGACGCUGAUUAGUCAUACCAACAGAAUGCAGUGCAAAAUCCGAAAUGCAAAAUGCA--------CUGGCAGAGCCAGAGGUAAAACCAAAGCAAAGCG
.((...(((((((........))).((((.......((((.((((..........))))...))))--------(((((...))))).)))).......))))..)). ( -27.40, z-score =  -2.19, R)
>droSim1.chr3R 19962254 100 + 27517382
UGCAUAUGCUGACGCUGAUUAGUCAUACCAACAGAAUGCAGUGCAAAAUCCGAAAUGCAAAAUGCA--------CUGGCAGUGCCAGAGGUAAAACCAAAGCAAAGCG
.((...(((((((........))).((((.......((((.((((..........))))...))))--------(((((...))))).)))).......))))..)). ( -27.40, z-score =  -1.78, R)
>consensus
UGCAUAUGCUGACGCUGAUUAGUCAUACCAACAGAAUGCAGUGCAAAAUCCGAAAUGCAAAAUGCA________CUGGCAGAGCCAGAGGUAAAACCAAAGCAAAGCG
.((...(((((((........))).((((.......((((.((((..........))))...))))........(((((...))))).)))).......))))..)). (-24.68 = -24.76 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:13 2011