| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,111,576 – 20,111,670 |
| Length | 94 |
| Max. P | 0.541176 |
| Location | 20,111,576 – 20,111,670 |
|---|---|
| Length | 94 |
| Sequences | 10 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 65.99 |
| Shannon entropy | 0.69232 |
| G+C content | 0.43273 |
| Mean single sequence MFE | -18.65 |
| Consensus MFE | -7.83 |
| Energy contribution | -7.67 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541176 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20111576 94 - 27905053 GUGCGAACGGCAGUAUCGUCGUU-AAUCAUUAUACAAAUCGGGCAACCGGAACGUUGUGCACAAUAUUUACAUA-UCCAUCCGAUUUUUUAUUUUC ((((.((((((......))))))-.........((((.((((....))))....))))))))............-..................... ( -21.20, z-score = -1.65, R) >droSim1.chr3R 19946150 93 - 27517382 GCGCGAACGGCAGUGUCGUCGUU-AAUCAUUAUACAAAUCGGGCAACCGGAACGUUGUGCGCAAUAUUUACAUA-UCCAUCCGAUUUUUUAUUUC- ((((.((((((......))))))-.........((((.((((....))))....))))))))............-....................- ( -22.70, z-score = -1.14, R) >droSec1.super_0 20445865 83 - 21120651 GUGCGAACGGCAGUGUCGUCGUU-AAUCAUUAUACAAAUCGGGAAACCGGAACGUUGUGCGCAAUAUUUACAUA-UCCAUCCGAU----------- ((((.((((((......))))))-.........((((.((((....))))....))))))))............-..........----------- ( -21.30, z-score = -0.74, R) >droEre2.scaffold_4820 2520494 74 + 10470090 -------------------CGUU-AACCAUUAUACAAAUCGGGCAACCGGAACGCUGUGCGCCUUAUUUACAUA-UCCGUUGGACUUUUAUUUUC- -------------------....-..((..........((((....))))((((.((((...........))))-..))))))............- ( -11.50, z-score = 0.27, R) >droYak2.chr3R 2437573 81 + 28832112 ------------CUGCGAACGUU-AAUCAUUAUACAAAUCGGGCAACCGGAACGAUGUGCGCAUUAUUUACAUA-UCCAUCCGAUUUUCAGUUUC- ------------....((((...-((((............((....))(((..((((((...........))))-))..)))))))....)))).- ( -16.50, z-score = -1.12, R) >droAna3.scaffold_13340 1314466 72 + 23697760 --------------GGCGUCGUU-AAUCAUUAAACAAAUCGGGCAACCGGAACGGAAUGCGCAAUAUUUACAUA-UCCGAUUUAUUUC-------- --------------.((((.(((-........)))...((((....))))........))))............-.............-------- ( -12.30, z-score = -0.21, R) >dp4.chr2 14129382 84 - 30794189 ---UUGAAAACGGCCGCGUCAUU-AAUCAUUACCCAACUCGGGCAACCGGAACGCGGUGCGCAAUAUUUACAUA-UCCGAUCUGGACUC------- ---.......(((((((((....-..............((((....)))).))))))).)).............-(((.....)))...------- ( -17.61, z-score = 0.38, R) >droPer1.super_0 5510434 84 + 11822988 ---UUGAAAACGGCAGCGUCAUU-AAUCAUUACCCAACUCGGGCAACCGGAACGCGGUGCGCAAUAUUUACAUA-UCCGAUCUGGACUC------- ---((((..(((....)))..))-)).......(((..((((((.((((.....))))..)).((((....)))-)))))..)))....------- ( -16.10, z-score = 0.53, R) >droMoj3.scaffold_6540 3324498 92 + 34148556 ---AUGUAAGCGUCAUCGUCGCCGAAUCGUUUCUCCAACCGGGCAACCGGAGCGCAAUGCGCAAUAUUUACAUAUUUCAAAUAUGUUUUAUUUUC- ---......(((.(((.(.(((.(((....))).....((((....)))).)))).))))))((((...((((((.....))))))..))))...- ( -24.80, z-score = -2.69, R) >droVir3.scaffold_13047 10956549 84 - 19223366 ---AUGUAAACGGCG-CGUCACCAAAUUGUCAAUCGAACCGGGCAACCGGAACGCAAUGCGCAAUAUUUACAUA-UUCGAUUUUUUUUU------- ---(((((((..(((-(((.......(((.....))).((((....))))......))))))....))))))).-..............------- ( -22.50, z-score = -1.94, R) >consensus ____UGAAAGCGGCGUCGUCGUU_AAUCAUUAUACAAAUCGGGCAACCGGAACGCUGUGCGCAAUAUUUACAUA_UCCAAUCGAUUUUU_______ ......................................((((....)))).............................................. ( -7.83 = -7.67 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:12 2011