| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,102,000 – 20,102,098 |
| Length | 98 |
| Max. P | 0.718059 |
| Location | 20,102,000 – 20,102,098 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 71.79 |
| Shannon entropy | 0.51144 |
| G+C content | 0.47510 |
| Mean single sequence MFE | -26.90 |
| Consensus MFE | -11.40 |
| Energy contribution | -12.20 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.718059 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20102000 98 - 27905053 GCCGCACUGAUUUGGACAUCGUAUGAUGUCAAUUAGA--GCCCGCAGGAACA----UCUUCUGACCAAA-----GAAAGUGUCCACCGAUUGUGGUUCGAUUCCAAAUU (((((((((((...((((((....)))))).))))).--...((..(((.((----..((((......)-----)))..)))))..))..))))))............. ( -27.00, z-score = -1.73, R) >droSim1.chr3R 19935622 101 - 27517382 GCCGCACUGAUUUGGACAUCGUACGAUGUCAAUUAGA--GCCCGCAGGAACAU-CUUCUUCUGACCAAA-----GAAAGAGUCCACCGCUUGUGGUUCGAUUCCGAAUU ...((.(((((...((((((....)))))).))))).--))(((((((.....-((..((((......)-----)))..)).......)))))))((((....)))).. ( -30.50, z-score = -2.34, R) >droSec1.super_0 20436310 101 - 21120651 GCCGCACUGAUUUGGACAUCGUACGAUGUCAAUUAGA--GCCCGCAGGAACAG-CUUCUUCUGACCAAA-----GAAAGAGUCCACCGCUUGUGGUUCGAUUCCGAAUU ...((.(((((...((((((....)))))).))))).--))(((((((....(-((..((((......)-----)))..)))......)))))))((((....)))).. ( -31.80, z-score = -2.53, R) >droYak2.chr3R 2427990 88 + 28832112 GCCUCACUGAUUUGGACAUCGUACGCUGUCAAUUGCU--GUCCGCAGGAACG----UCUUCUGACCAAA-----GAAAGAGUCCA------CCG----AAUUCCAAGCU ..........((((((..(((...((.(.((.....)--).).)).(((...----((((((......)-----).)))).))).------.))----)..)))))).. ( -17.00, z-score = 0.64, R) >droEre2.scaffold_4820 2509149 94 + 10470090 GCCUCACUGAUUUGGACAUCGCACGAUGUCAAUUAGU--GCGCCCAGGAACA----UCUUCCGACCCAA-----GAAAGAGUUCACCGAUUCCG----AAUUCCAAGCU ((..(((((((...((((((....)))))).))))))--).))...((((..----..)))).......-----....((((((.........)----)))))...... ( -23.00, z-score = -1.63, R) >droAna3.scaffold_13340 1303221 107 + 23697760 --GGCAGCUCUUCGAACAUCAUACGAUGUUCAGAAAUAAGCCAACAGUAGUGGAUGGUUCCUGACCAUAAUAGCAACAAAGUCUGCUAAAUGUGGUCUGAUUCCAAAUU --(((.....((((((((((....))))))).)))....)))........((((....((..(((((((.(((((........)))))..))))))).)).)))).... ( -32.10, z-score = -3.31, R) >consensus GCCGCACUGAUUUGGACAUCGUACGAUGUCAAUUAGA__GCCCGCAGGAACA____UCUUCUGACCAAA_____GAAAGAGUCCACCGAUUGUGGUUCGAUUCCAAAUU ......(((((...((((((....)))))).)))))........(((((.........)))))...............(((((.((((....))))..)))))...... (-11.40 = -12.20 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:11 2011