| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,065,762 – 20,065,853 |
| Length | 91 |
| Max. P | 0.527779 |
| Location | 20,065,762 – 20,065,853 |
|---|---|
| Length | 91 |
| Sequences | 13 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 62.12 |
| Shannon entropy | 0.73364 |
| G+C content | 0.54574 |
| Mean single sequence MFE | -32.58 |
| Consensus MFE | -10.21 |
| Energy contribution | -9.54 |
| Covariance contribution | -0.67 |
| Combinations/Pair | 2.00 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527779 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20065762 91 + 27905053 ---UCUACAGCGCAAGA--CGGCCAUGGACGAUUUCCGUGGCAUGUUGGAGACGGCGGUAAAUGGUCCAAGGGGC------AGAAAAG---ACCUGGCU---CUUAAC------------ ---............((--(.((((((((.....)))))))).(((((....))))).......))).(((((.(------((.....---..))).))---)))...------------ ( -31.50, z-score = -1.87, R) >droSim1.chr3R 19897458 91 + 27517382 ---UCUACAGCGCAAGA--CGGCCAUGGACGAUUUCCGUGGCAUGUUGGAGACGGCGGUAAAUGGUCCAAGGGGC------AGAAAAG---ACCUGGCU---CUUAAC------------ ---............((--(.((((((((.....)))))))).(((((....))))).......))).(((((.(------((.....---..))).))---)))...------------ ( -31.50, z-score = -1.87, R) >droSec1.super_0 20398129 91 + 21120651 ---UCUACAGCGCAAGA--CGGCCAUGGACGAUUUCCGUGGCAUGUUGGAGACGGCGGUAAAUGGUCCAAGGGGC------AGAAAAG---ACCUGGCU---CUUAAC------------ ---............((--(.((((((((.....)))))))).(((((....))))).......))).(((((.(------((.....---..))).))---)))...------------ ( -31.50, z-score = -1.87, R) >droYak2.chr3R 2390771 91 - 28832112 ---UCUGCAGCGCAAGA--CGGCCAUGGAGGAUUUCCGUGGCAUGUUGGAGACGGCGGUAAAUGGGUCAAGGGCC------AGAAAAG---ACCUGGCU---CUUAAA------------ ---..(((...))).((--(.(((((((((...))))))))).(((((....)))))........)))(((((((------((.....---..))))))---)))...------------ ( -37.00, z-score = -2.98, R) >droEre2.scaffold_4820 2473354 91 - 10470090 ---UUUACAGCGCAAGA--CGGCCAUGGAGGAUUUCCGUGGCAUGUUGGAGACGGCGGUAAAUGGGUCAAGGGCC------AGAAAAG---ACCCGGCU---CUUAAA------------ ---............((--(.(((((((((...))))))))).(((((....)))))........)))(((((((------.(.....---..).))))---)))...------------ ( -32.20, z-score = -1.88, R) >droAna3.scaffold_13340 1266325 94 - 23697760 ---ACUGCAGCGCAAGU--CGGUGAUGGAGGAUAUUCAUGGAAUGCUGGAGACGGCGGUGAAUGGGUCUCGCGGA------AGGAAGG---ACUUGGCUGCCCUCAAC------------ ---...(((((.(((((--(.......((((.(((((((....(((((....))))))))))))..)))).(...------.)....)---)))))))))).......------------ ( -37.40, z-score = -3.05, R) >dp4.chr2 14603631 91 + 30794189 ---CAUGCAGCGAAAGA--CAGCCAUGGAGGACUUUCGUGGUCUGCUGGAAACAGCUGUGAAUGGAUCGCGGGGC------AGGAAUG---AAUUGGCCAUGACU--------------- ---...((..(....).--..))(((((......(((((..(((((((....)..((((((.....)))))))))------))).)))---))....)))))...--------------- ( -29.10, z-score = -1.24, R) >droPer1.super_0 6008690 91 - 11822988 ---CAUGCAGCGAAAGA--CAGCCAUGGAAGACUUUCGUGGUCUGCUGGAGACAGCUGUGAAUGGAUCGCGGGGC------AGGAAUG---AAUUGGCCAUGACU--------------- ---...((..(....).--..))(((((..((..(((((..(((((((....)..((((((.....)))))))))------))).)))---))))..)))))...--------------- ( -29.30, z-score = -1.27, R) >droWil1.scaffold_181089 9527121 94 - 12369635 ---UCUGCAACAUAAGC--CAACUAUGGAAGAUUUUCGUGGUCUGCUGGAGACAGCAGUCAAUGAAUCAAGGGGC------CGCAAUG---AUCUGACUGCCAUCAAU------------ ---.............(--((....)))..(((((...(((.((((((....)))))))))..)))))....(((------.(((...---...)).).)))......------------ ( -25.80, z-score = -0.64, R) >droMoj3.scaffold_6540 7516467 106 + 34148556 ---GCUGCAUCAAAAGU--CUGCAAUGGAGGACUUUCGAGGUCUGCUUGAAACGGCGGUUAAUGAGUCAAUGAAC------GCUCAUU---CCUUGGUCCGGUUCAAUGACAAGCUGGCC ---(((((.((.(((((--((........))))))).)).(((...(((((.((((.(..(((((((........------)))))))---...).).))).))))).)))..)).))). ( -30.00, z-score = -0.24, R) >droGri2.scaffold_14906 12060938 115 - 14172833 ---GCUGCAGCACAAGG--CUGCCAUGGAGGACUUUCGCGGCCUGCUUGAGACUGCGGUCAAUGAGUCGAGAGGAAAUGGCGGCCAUUCAACGCUGACAUGCUUCAAUGAUAAACUGGCA ---(((.((((....((--(((((((......(((((((((((.((........)))))).....).))))))...))))))))).......)))).(((......))).......))). ( -36.40, z-score = 0.26, R) >droVir3.scaffold_12855 9142070 106 - 10161210 ---CCUGCAGCACAAAG--CUGACAUGGAGGACUUUCGUGGCCUGCUUGAGACAGCGGUCAAUGAGUCAAGGAGG------GGUCAUU---CGCUGGCCCGAUUCAAUGAUAAGCUGGCC ---((((((((.....)--))).)).))...........((((.(((((.(((....)))..((((((......(------(((((..---...))))))))))))....))))).)))) ( -35.70, z-score = -0.29, R) >anoGam1.chr2L 35924160 93 + 48795086 GCAUCCGCAGCACAUGAUGCGACCGGCGGCGGCGUUGGUGGUGGGUCGACGAAGGUGG--AAGAAAUCGCCGUGUCG----GCUAGUUUCACGCUAGCC--------------------- (.((((((.(((.....))).(((((((....))))))).)))))))((((..(((((--......))))).))))(----((((((.....)))))))--------------------- ( -36.20, z-score = -0.23, R) >consensus ___UCUGCAGCGCAAGA__CGGCCAUGGAGGAUUUUCGUGGCAUGCUGGAGACGGCGGUAAAUGGGUCAAGGGGC______AGAAAUG___ACCUGGCU___CUUAAC____________ .........((..........((((((((.....))))))))..(((......)))........................................))...................... (-10.21 = -9.54 + -0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:05 2011