| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,058,394 – 20,058,486 |
| Length | 92 |
| Max. P | 0.878667 |
| Location | 20,058,394 – 20,058,486 |
|---|---|
| Length | 92 |
| Sequences | 10 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 68.69 |
| Shannon entropy | 0.69133 |
| G+C content | 0.59570 |
| Mean single sequence MFE | -32.38 |
| Consensus MFE | -14.71 |
| Energy contribution | -14.54 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.79 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.878667 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20058394 92 - 27905053 AGCCGCAUCCUUUAGCUUUUGCUUAAGCAGGACAGCGGCAUUGGCCAUAUCAACGGCGGGAUUCAGGGCCAUUCUGGCCCCGCCUACCGCUC-- .(((((.((((...((((......))))))))..)))))...............(((((....(.(((((.....))))).)....))))).-- ( -36.40, z-score = -1.92, R) >droSim1.chr3R 19888599 92 - 27517382 AGCCGCAUCCUUUAGCUUUUGCUUAAGCACGACAGCGGCAUUGGCCAUAUCAACGGCGGGAUUCAGGGCCAUUCUGGCCCCGCCUACCGCUC-- .(((((.(((((.(((....))).)))...))..)))))...............(((((....(.(((((.....))))).)....))))).-- ( -32.80, z-score = -1.30, R) >droSec1.super_0 20390765 92 - 21120651 AGCUGCAUCCUUUAGCUUUUGCUUAAGCACGACAGCGGCAUUGGCCAUAUCAACGGCGGGAUUCAGGGCCAUUCUGGCCCCGCCUACCGCUC-- .(((((...(((.(((....))).)))...).))))(((....)))........(((((....(.(((((.....))))).)....))))).-- ( -33.70, z-score = -1.62, R) >droYak2.chr3R 2383447 92 + 28832112 AGCCGCAUCCUUUAGCUUUUGCUUAAGCAGGACAGCGGCAUUGGCCACAUCUACGGCGGGAUUUAGGGCCAUUCUGGCCCCGCCUCCCGCUC-- .(((((.((((...((((......))))))))..)))))...............(((((((....(((((.....)))))....))))))).-- ( -40.70, z-score = -3.04, R) >droEre2.scaffold_4820 2465971 92 + 10470090 AGCCGCAUCCUUUAGCUUUUGCUUAAGCAGGACAGCGGCAUUGGCCACAUCUACGGCGGGAUUUAGGGCCAUUCUGGCCCCGCCUCCCGCUC-- .(((((.((((...((((......))))))))..)))))...............(((((((....(((((.....)))))....))))))).-- ( -40.70, z-score = -3.04, R) >droAna3.scaffold_13340 1258766 92 + 23697760 GGCGGCAUCCUUUAGCUUCUGCUUGAGCACGGCCGCUGUUUUGGCCACAUCGACAGCAGUGCUACUGGACCGGUUUGGACCACCGGCAGCAC-- .((.((.(((..((((..((((((((....(((((......)))))...)))..))))).))))..))).((((.......)))))).))..-- ( -33.20, z-score = -0.77, R) >dp4.chr2 14595694 83 - 30794189 GGCGGCAUCCUUUAUCUUUUGCUUCAGCACCGCAGCCGCAUUGGCCACAUCGACGGUAGGAUUGAGGGCCAUGCUUAAUGCCC----------- (((((((.....)......(((....))).....)))((((.((((...((((........)))).)))))))).....))).----------- ( -23.20, z-score = 0.58, R) >droPer1.super_0 6000766 83 + 11822988 GGCGGCAUCCUUUAGCGUUUGCUUCAGCACCGCAGCCGCAUUGGCCACAUCAACGGCAGGAUUGAGGGCCAUGCUCAAUGCCC----------- (((((((.....).(((..(((....))).))).)))((((.((((...((((........)))).)))))))).....))).----------- ( -28.00, z-score = -0.11, R) >droWil1.scaffold_181089 9520207 92 + 12369635 AGCGGCGUCUUUCAAUUUUUGUUUGAGAACGGCUGCCGCAUUUGCCACAUCCACGGCGGGAUUGAGGCUCAUGCUGAGGGCACCAGCGGCGG-- .((.((((.((((((.......))))))))((.((((((((..(((.(((((......))).)).)))..))))....)))))).)).))..-- ( -32.90, z-score = -0.56, R) >anoGam1.chr2R 41005006 85 - 62725911 GGCGGUAACC---------GGCUUCGACGCUGCGGCCGUAUUUCCGGUACCUCCUCCUACGCCUCCUGCGGUUUUACCCCCAUCGCCAUCGCUG (((((((.((---------((.....((((....).)))....))))))))........(((.....)))..............)))....... ( -22.20, z-score = 0.47, R) >consensus AGCGGCAUCCUUUAGCUUUUGCUUAAGCACGACAGCGGCAUUGGCCACAUCAACGGCGGGAUUCAGGGCCAUUCUGGCCCCGCCUACCGCUC__ .(((((...(((.(((....))).))).......)))))..(((((..(((........)))....)))))....................... (-14.71 = -14.54 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:04 2011