| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,056,159 – 20,056,271 |
| Length | 112 |
| Max. P | 0.512832 |
| Location | 20,056,159 – 20,056,271 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 71.99 |
| Shannon entropy | 0.54064 |
| G+C content | 0.44432 |
| Mean single sequence MFE | -28.06 |
| Consensus MFE | -13.84 |
| Energy contribution | -14.73 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20056159 112 + 27905053 AUGGGACCACAGCCAGACUAUUCAAAAAUAUCACCCUGCCGGAAACAAAAGUGAAGGGAGAAAUAUCGAUGUGAAUUUAUAUCGCGA-GCCGCAGUAUGGUCCUACCUUUUCU .((((((((......((.((((....))))))...((((.(....).........((((......))((((((....))))))....-.))))))..))))))))........ ( -24.20, z-score = -0.14, R) >droAna3.scaffold_13340 1256238 113 - 23697760 GUAGUACUAAAAUCCGGGCAAUCUGAAACGGUAUGCCAUGCCCAACCGGGUAAAACAUUGGAUAUUUUAUUCGAUAUAUCGAUACAUCGGCGAAACAUCGAUUGACAACCUCU (((........((((((((((((......))).)))).(((((....)))))......))))).......((((....))))))).(((((((....))).))))........ ( -23.90, z-score = -0.28, R) >droEre2.scaffold_4820 2463744 112 - 10470090 AUGGGACCGCAACGAGACAAUUCAAAAAUACCAACUUGCCGGAAACAAAAGUGAAGGGAGAAAUAUCGAUGUGAGUUCAUAUCGCGA-GACGCAGUAGGGUCCUACCUUUUCU .(((((((.(.((.................((.((((...(....)..))))....)).........((((((....))))))(((.-..))).)).))))))))........ ( -26.90, z-score = -0.75, R) >droYak2.chr3R 2381164 112 - 28832112 AUGGGACCGCAAGGAGACCAUUUAAAAAUACCUCCUUGCCGGAAACAAAAGGGAAGGGAGAAAUAUCGAUGUGAGUUCAUAUCGCAA-GACACAGUACGGUCCUACCUUUUCU .((...((((((((((...............))))))).)))...))..((..((((.((......(((((((....)))))))...-(((........))))).))))..)) ( -32.86, z-score = -2.20, R) >droSec1.super_0 20388505 112 + 21120651 AUGGGACCACAGCAAGAGUAUUCAAAAAUACCACCCCGCCGGAAACAAAAGUGAAGGGAGAAAUAUCGAUGUGAGUUCACAUCGUGA-GUCGCAGUACGGUCCUACCUUUUCU .(((((((((.((..(.(((((....)))))).((((((.(....)....)))..))).((.....(((((((....)))))))...-.)))).))..)))))))........ ( -31.40, z-score = -1.98, R) >droSim1.chr3R 19886365 112 + 27517382 AUGGGACCACAGCAAGACUAUUCAAAAAUACCACCCCGCCGGAAACAAAAGUGAAGGGAGAAAUAUCGAUGUGAGUUCAUAUCGUGA-GUCGCAGUACGGUCCUACCUUUUCU .(((((((((.((..((((..............((((((.(....)....)))..)))........(((((((....)))))))..)-))))).))..)))))))........ ( -29.10, z-score = -1.36, R) >consensus AUGGGACCACAACAAGACUAUUCAAAAAUACCACCCCGCCGGAAACAAAAGUGAAGGGAGAAAUAUCGAUGUGAGUUCAUAUCGCGA_GACGCAGUACGGUCCUACCUUUUCU .(((((((................................(....)....................(((((((....)))))))..............)))))))........ (-13.84 = -14.73 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:03 2011