| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,490,449 – 8,490,499 |
| Length | 50 |
| Max. P | 0.669825 |
| Location | 8,490,449 – 8,490,499 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 76.97 |
| Shannon entropy | 0.31917 |
| G+C content | 0.36484 |
| Mean single sequence MFE | -9.13 |
| Consensus MFE | -6.42 |
| Energy contribution | -7.53 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.669825 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8490449 50 + 23011544 -UUGUACCCUUUGCAAGGGUAUAGAGUCAAAUAGCUUAACAAAACCACAAA -.((((((((.....))))))))((((......)))).............. ( -11.00, z-score = -2.05, R) >droSec1.super_3 3977273 51 + 7220098 UAUAUACCCUUUGUAAGGGUAUAGAGUCAAAUAGCUUAUCAAAACAAUAAA ..((((((((.....))))))))((((......)))).............. ( -11.10, z-score = -2.98, R) >droYak2.chr2L 11135391 50 + 22324452 -UCAUACCCCUUGCCAGGGAAUCGAGUCAAACAGCUGAACAAAACAGAUAG -......((((....))))..((.(((......)))))............. ( -5.30, z-score = 0.23, R) >consensus _UUAUACCCUUUGCAAGGGUAUAGAGUCAAAUAGCUUAACAAAACAAAAAA ..((((((((.....))))))))((((......)))).............. ( -6.42 = -7.53 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:12 2011