Locus 11289

Sequence ID dm3.chr3R
Location 20,051,801 – 20,051,892
Length 91
Max. P 0.937935
window15514 window15515

overview

Window 4

Location 20,051,801 – 20,051,892
Length 91
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 99.45
Shannon entropy 0.00892
G+C content 0.50275
Mean single sequence MFE -27.02
Consensus MFE -27.21
Energy contribution -27.02
Covariance contribution -0.19
Combinations/Pair 1.05
Mean z-score -1.63
Structure conservation index 1.01
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.42
SVM RNA-class probability 0.937935
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 20051801 91 + 27905053
CUGGUGCACUUGUUGUGCCUGCUGUUGUUGCUGAAUGAGAUUGGUGACGGGUAUUUGAAUGUUGGUGCCGGGUAUGGUGAUCAGCUGGGUU
(..((....(..(..(((((.....(((..(..(......)..)..)))((((((........)))))))))))..)..)...))..)... ( -26.80, z-score =  -1.60, R)
>droSim1.chr3R 19879481 91 + 27517382
CUGGUGCACUUGUUGUGCCUGCUGUUGUUGCUGAAUGAGAUUGGUGACAGGUAUUUGAAUGUUGGUGCCGGGUAUGGUGAUCAGCUGGGUU
(..((....(..(..(((((.....(((..(..(......)..)..)))((((((........)))))))))))..)..)...))..)... ( -27.70, z-score =  -1.73, R)
>droSec1.super_0 20384144 91 + 21120651
CUGGUGCACUUGUUGUGCCUGCUGUUGUUGCUGAAUGAGAUUGGUGACGGGUAUUUGAAUGUUGGUGCCGGGUAUGGUGAUCAGCUGGGUU
(..((....(..(..(((((.....(((..(..(......)..)..)))((((((........)))))))))))..)..)...))..)... ( -26.80, z-score =  -1.60, R)
>droYak2.chr3R 2376687 91 - 28832112
CUGGUGCACUUGUUGUGCCUGCUGUUGUUGCUGAAUGAGAUUGGUGACGGGUAUUUGAAUGUUGGUGCCGGGUAUGGUGAUCAGCUGGGUU
(..((....(..(..(((((.....(((..(..(......)..)..)))((((((........)))))))))))..)..)...))..)... ( -26.80, z-score =  -1.60, R)
>consensus
CUGGUGCACUUGUUGUGCCUGCUGUUGUUGCUGAAUGAGAUUGGUGACGGGUAUUUGAAUGUUGGUGCCGGGUAUGGUGAUCAGCUGGGUU
(..((....(..(..(((((.....(((..(..(......)..)..)))((((((........)))))))))))..)..)...))..)... (-27.21 = -27.02 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 20,051,801 – 20,051,892
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 99.45
Shannon entropy 0.00892
G+C content 0.50275
Mean single sequence MFE -12.45
Consensus MFE -12.30
Energy contribution -12.29
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.99
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.25
SVM RNA-class probability 0.916794
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 20051801 91 - 27905053
AACCCAGCUGAUCACCAUACCCGGCACCAACAUUCAAAUACCCGUCACCAAUCUCAUUCAGCAACAACAGCAGGCACAACAAGUGCACCAG
......(((((...........(((..................)))...........)))))...........((((.....))))..... ( -12.22, z-score =  -1.72, R)
>droSim1.chr3R 19879481 91 - 27517382
AACCCAGCUGAUCACCAUACCCGGCACCAACAUUCAAAUACCUGUCACCAAUCUCAUUCAGCAACAACAGCAGGCACAACAAGUGCACCAG
......(((((...........((((................))))...........)))))...........((((.....))))..... ( -13.14, z-score =  -1.54, R)
>droSec1.super_0 20384144 91 - 21120651
AACCCAGCUGAUCACCAUACCCGGCACCAACAUUCAAAUACCCGUCACCAAUCUCAUUCAGCAACAACAGCAGGCACAACAAGUGCACCAG
......(((((...........(((..................)))...........)))))...........((((.....))))..... ( -12.22, z-score =  -1.72, R)
>droYak2.chr3R 2376687 91 + 28832112
AACCCAGCUGAUCACCAUACCCGGCACCAACAUUCAAAUACCCGUCACCAAUCUCAUUCAGCAACAACAGCAGGCACAACAAGUGCACCAG
......(((((...........(((..................)))...........)))))...........((((.....))))..... ( -12.22, z-score =  -1.72, R)
>consensus
AACCCAGCUGAUCACCAUACCCGGCACCAACAUUCAAAUACCCGUCACCAAUCUCAUUCAGCAACAACAGCAGGCACAACAAGUGCACCAG
......(((((...........(((..................)))...........)))))...........((((.....))))..... (-12.30 = -12.29 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:02 2011