| Sequence ID | dm3.chr3R |
|---|---|
| Location | 20,027,991 – 20,028,101 |
| Length | 110 |
| Max. P | 0.909853 |
| Location | 20,027,991 – 20,028,101 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 87.00 |
| Shannon entropy | 0.21970 |
| G+C content | 0.41276 |
| Mean single sequence MFE | -31.51 |
| Consensus MFE | -25.80 |
| Energy contribution | -25.44 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.909853 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 20027991 110 + 27905053 CGUUAUUCUGUGGGCUUUCUGCUGUCAGAUGUUAAUUUGCUUGGC-AAAGUAG---UAUCAUGACUUUAUGUUGGGAAAGCACAAUUGUAAUU----UAUUCCCAAUCAUCUACGGAC ......(((((((((.....)).(((((((((((.(((((...))-))).)))---)))).))))...((((((((((...............----..))))))).)))))))))). ( -27.53, z-score = -1.58, R) >droSim1.chr3R 19861000 108 + 27517382 CGUUAUUCUGUGGGCUUUCUGCUGUCAGAUGUUAAUUUGCUUGGC-AAAGUAG---CAUCAUGACUUUGAGUUGGGAAAGCACAAUUGUAAU------GUUCCCAAUCAUCUACGGAC ......(((((((((.....)).(((((((((((.(((((...))-))).)))---)))).))))..(((.(((((((.(((....)))...------.)))))))))).))))))). ( -35.50, z-score = -3.29, R) >droSec1.super_0 20365543 111 + 21120651 CGUUAUUCUGUGGGCUUUCUGCUGUCAGAUGUUAAUUUGCUUGGC-AAAGUAGUAGCAUCAUGACUUUGAGUUGGGAAAGCACAAUUGUUAU------GUUCCCAAUCAUCUACGGAG ......(((((((((.....)).(((((((((((...(((((...-.))))).))))))).))))..(((.(((((((((((....))))..------.)))))))))).))))))). ( -35.20, z-score = -2.88, R) >droYak2.chr3R 2357377 115 - 28832112 CGUUAUUCUGUGGGUUCUCCGCUGUCAGAUGUUAAUUGACUUGGGGUAAGUAG---UAUCAUGACUUUCCGUUGGGAAAGCACAAUUGCAUUGGCAAUGUUCCCAAUCAUCGACAGAC ......(((((.(((...(((..(((((.......))))).)))((.((((..---.......)))).))((((((((......(((((....))))).)))))))).))).))))). ( -29.90, z-score = -0.41, R) >droEre2.scaffold_4820 2440457 108 - 10470090 CGUUAUUCUGUGGGUUCUCUGCUGUCAGAUGUUAAUUUACUUGGC-UAAGUAG---UACCAUGACUUUCAGUUGGGAAAGCACAAUUGCA------AUGUUCCCAAUCAUCUACAGAC ......(((((((((...(((..((((...((....((((((...-.))))))---.))..))))...)))(((((((.(((....))).------...)))))))..))))))))). ( -29.40, z-score = -1.88, R) >consensus CGUUAUUCUGUGGGCUUUCUGCUGUCAGAUGUUAAUUUGCUUGGC_AAAGUAG___UAUCAUGACUUUCAGUUGGGAAAGCACAAUUGUAAU_____UGUUCCCAAUCAUCUACGGAC ......((((((((.........((((((((.....((((((.....))))))...)))).)))).....((((((((.(((....)))..........))))))))..)))))))). (-25.80 = -25.44 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:40:01 2011