| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,996,964 – 19,997,029 |
| Length | 65 |
| Max. P | 0.968586 |
| Location | 19,996,964 – 19,997,029 |
|---|---|
| Length | 65 |
| Sequences | 7 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 60.84 |
| Shannon entropy | 0.69123 |
| G+C content | 0.52779 |
| Mean single sequence MFE | -18.49 |
| Consensus MFE | -8.87 |
| Energy contribution | -8.67 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.968586 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19996964 65 + 27905053 ---------UACCCUGGCUAAAUGGCCGAUCG-UAGAUCAUAGAGUCGACUGCAGGGGAUUAACCUAGAUCGCUA ---------......((((....))))(((((-(((.((........)))))).(((......))).)))).... ( -17.80, z-score = -0.81, R) >droSim1.chr3R 19830457 62 + 27517382 ---------UACCCUGGCUAAAUGGCCGAUCG-UAGAUCAUGGAGUCGACUGCAGGGGAUUACCCUAGAUCG--- ---------......((((....))))(((((-(((.((........))))))((((.....)))).)))).--- ( -20.90, z-score = -1.73, R) >droSec1.super_0 20334847 62 + 21120651 ---------UACCCUGGCUAAAUGGCCGAUCG-UAGAUCAUGGAGUCGACUGCAGGGGAUUACCCUAGAUCG--- ---------......((((....))))(((((-(((.((........))))))((((.....)))).)))).--- ( -20.90, z-score = -1.73, R) >droYak2.chr3R 2326204 55 - 28832112 ---------UACCCUGGCCAAAUGGCUGAUCG-UCGAUCAUGGAGUCGACUGCAGGGGAUUACCC---------- ---------..((((((((....))).....(-(((((......))))))..)))))........---------- ( -20.70, z-score = -2.09, R) >droEre2.scaffold_4820 2409429 62 - 10470090 ---------UACCCUGGCUAAAUGGCUGAUCG-UAGAUCACGGAGUCGACUGCAGGGGAUUACCCUGUAUCA--- ---------.((((.((((....))))((((.-..))))..)).)).((.(((((((.....))))))))).--- ( -19.30, z-score = -1.16, R) >dp4.chr2 14534222 61 + 30794189 --------------CACUCUAGCCACUGGCCACUAAAUCAUAGCUCCCUCCGGGCAUGACUAACUACGACCAGUA --------------..........((((((.......((((.((((.....))))))))........).))))). ( -11.86, z-score = -0.93, R) >droPer1.super_0 5936285 75 - 11822988 CACUCUAGCCGAUUCCCACAAAUGUCUGGCCACUAAAUCAUAGCUCCCUCCGGGCAUGACUAACUGCGGCCAGUA .........................((((((.(....((((.((((.....))))))))......).)))))).. ( -18.00, z-score = -1.12, R) >consensus _________UACCCUGGCUAAAUGGCUGAUCG_UAGAUCAUGGAGUCGACUGCAGGGGAUUACCCUAGAUCA___ ...........((((((((....))))((((....))))..............)))).................. ( -8.87 = -8.67 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:39:56 2011